hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-13244424/chunk_1/iprscan-20090416-13244424.nocrc
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Query sequence: ek00105
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00386.12.ls C1q domain                                     170.5      4e-48   1
PF00386.12.fs C1q domain                                     168.6    1.5e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00386.12.fs   1/1     701   826 ..     1   138 []   168.6  1.5e-47
PF00386.12.ls   1/1     701   826 ..     1   138 []   170.5    4e-48

Alignments of top-scoring domains:
PF00386.12.fs: domain 1 of 1, from 701 to 826: score 168.6, E = 1.5e-47
                   *->AFSAglteslpppnqsgpygetpvvFdkvltNigghYdpaTGkFtCp
                      AFSA++t++l p+ + ++    p+vFd  l N+g+ +d + G+F+Cp
     ek00105   701    AFSAARTSNLAPG-TLDQ----PIVFDLLLNNLGETFDLQLGRFNCP 742  

                   vpGvYyFsfhihskgvkeknlkvgLmkNgqevvstydqasngsgkldvaS
                   v G Y+F fh+  k + +  l+v+LmkN ++ vs y++++  +  +++aS
     ek00105   743 VNGTYVFIFHML-KLAVNVPLYVNLMKNEEVLVSAYANDGAPD--HETAS 789  

                   gsvvLqLekGDeVWleldggernglysdegdtdstFSGFLL<-*
                   ++++LqL +GD++Wl+l+    +g+++++++++stFSG+LL   
     ek00105   790 NHAILQLFQGDQIWLRLH----RGAIYGSSWKYSTFSGYLL    826  

PF00386.12.ls: domain 1 of 1, from 701 to 826: score 170.5, E = 4e-48
                   *->AFSAglteslpppnqsgpygetpvvFdkvltNigghYdpaTGkFtCp
                      AFSA++t++l p+ + ++    p+vFd  l N+g+ +d + G+F+Cp
     ek00105   701    AFSAARTSNLAPG-TLDQ----PIVFDLLLNNLGETFDLQLGRFNCP 742  

                   vpGvYyFsfhihskgvkeknlkvgLmkNgqevvstydqasngsgkldvaS
                   v G Y+F fh+  k + +  l+v+LmkN ++ vs y++++  +  +++aS
     ek00105   743 VNGTYVFIFHML-KLAVNVPLYVNLMKNEEVLVSAYANDGAPD--HETAS 789  

                   gsvvLqLekGDeVWleldggernglysdegdtdstFSGFLL<-*
                   ++++LqL +GD++Wl+l+    +g+++++++++stFSG+LL   
     ek00105   790 NHAILQLFQGDQIWLRLH----RGAIYGSSWKYSTFSGYLL    826  

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