hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-23275067/chunk_1/iprscan-20080808-23275067.nocrc
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Query sequence: ek00108
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     21.4    2.9e-05   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     22.0     0.0012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.ls   1/1     124   201 ..     1    74 []    22.0   0.0012
PF00076.12.fs   1/1     143   201 ..    17    74 .]    21.4  2.9e-05

Alignments of top-scoring domains:
PF00076.12.ls: domain 1 of 1, from 124 to 201: score 22.0, E = 0.0012
                   *->lfVgNL.ppdtteedLk..dlFskfGpiesikivrD.tt.retgrsk
                      +fV +L+ + ++ e Lk++++F+kfG+i +  +++++t+      + 
     ek00108   124    VFVVGLsQRLADPEVLKrpEYFGKFGKI-HKVVINNsTSyAGSQGPS 169  

                   GfaFVeFedeedAekAldalnGkelggrelrv<-*
                     a+V++  +edA +A+++ n+  ++gr+l+    
     ek00108   170 ASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA    201  

PF00076.12.fs: domain 1 of 1, from 143 to 201: score 21.4, E = 2.9e-05
                   *->dlFskfGpiesikivrD.tt.retgrskGfaFVeFedeedAekAlda
                      ++F+kfG+i +  +++++t+      +   a+V++  +edA +A+++
     ek00108   143    EYFGKFGKI-HKVVINNsTSyAGSQGPSASAYVTYIRSEDALRAIQC 188  

                   lnGkelggrelrv<-*
                    n+  ++gr+l+    
     ek00108   189 VNNVVVDGRTLKA    201  

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