hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-07041872/chunk_1/iprscan-20090618-07041872.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00114 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08324.1.ls PUL domain 382.6 5.6e-112 1 PF08324.1.fs PUL domain 380.7 2.1e-111 1 PF09070.1.ls PFU (PLAA family ubiquitin binding) 260.4 3.3e-75 1 PF09070.1.fs PFU (PLAA family ubiquitin binding) 258.5 1.2e-74 1 PF00400.22.ls WD domain, G-beta repeat 205.9 8.6e-59 7 PF00400.22.fs WD domain, G-beta repeat 192.2 1.2e-54 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.ls 1/7 41 80 .. 1 38 [] 21.8 0.0022 PF00400.22.fs 1/7 41 80 .. 1 38 [] 19.8 0.00013 PF00400.22.ls 2/7 88 131 .. 1 38 [] 32.0 1.9e-06 PF00400.22.fs 2/7 88 131 .. 1 38 [] 30.0 1.8e-07 PF00400.22.fs 3/7 135 172 .. 1 38 [] 22.6 2.1e-05 PF00400.22.ls 3/7 135 172 .. 1 38 [] 24.6 0.00034 PF00400.22.ls 4/7 174 212 .. 1 38 [] 47.0 6.1e-11 PF00400.22.fs 4/7 174 212 .. 1 38 [] 45.0 1e-11 PF00400.22.ls 5/7 214 251 .. 1 38 [] 24.1 0.00045 PF00400.22.fs 5/7 214 251 .. 1 38 [] 22.2 2.8e-05 PF00400.22.fs 6/7 254 292 .. 1 38 [] 38.4 7.4e-10 PF00400.22.ls 6/7 254 292 .. 1 38 [] 40.4 5.7e-09 PF00400.22.fs 7/7 294 331 .. 1 38 [] 14.1 0.0052 PF09070.1.ls 1/1 377 494 .. 1 131 [] 260.4 3.3e-75 PF09070.1.fs 1/1 377 494 .. 1 131 [] 258.5 1.2e-74 PF08324.1.ls 1/1 566 824 .. 1 305 [] 382.6 5.6e-112 PF08324.1.fs 1/1 566 824 .. 1 305 [] 380.7 2.1e-111 Alignments of top-scoring domains: PF00400.22.ls: domain 1 of 7, from 41 to 80: score 21.8, E = 0.0022 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + +l+gH+ V+ + ++ + ++s SrD+t ++W ek00114 41 YRLScSLrGHELDVRGLVCCAYPPGAFVSVSRDRTTRLWA 80 PF00400.22.fs: domain 1 of 7, from 41 to 80: score 19.8, E = 0.00013 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + +l+gH+ V+ + ++ + ++s SrD+t ++W ek00114 41 YRLScSLrGHELDVRGLVCCAYPPGAFVSVSRDRTTRLWA 80 PF00400.22.ls: domain 2 of 7, from 88 to 131: score 32.0, E = 1.9e-06 *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-* + + +gH+++V+cv++ p+++ l+a+g+ D++i+i++ ek00114 88 FTEMhCMsGHSNFVSCVCIIPSsdiyPHGLIATGGNDHNICIFS 131 PF00400.22.fs: domain 2 of 7, from 88 to 131: score 30.0, E = 1.8e-07 *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-* + + +gH+++V+cv++ p+++ l+a+g+ D++i+i++ ek00114 88 FTEMhCMsGHSNFVSCVCIIPSsdiyPHGLIATGGNDHNICIFS 131 PF00400.22.fs: domain 3 of 7, from 135 to 172: score 22.6, E = 2.1e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ +l+gH++tV++++ +l+sgS+D t k+W ek00114 135 PMPLyILkGHKNTVCSLSSGKF--GTLLSGSWDTTAKVWL 172 PF00400.22.ls: domain 3 of 7, from 135 to 172: score 24.6, E = 0.00034 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ +l+gH++tV++++ +l+sgS+D t k+W ek00114 135 PMPLyILkGHKNTVCSLSSGKF--GTLLSGSWDTTAKVWL 172 PF00400.22.ls: domain 4 of 7, from 174 to 212: score 47.0, E = 6.1e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c +l+gHt++V++v++ p+ + l+++gS+D+t+k+W+ ek00114 174 DKCMmTLqGHTAAVWAVKILPE-QGLMLTGSADKTVKLWK 212 PF00400.22.fs: domain 4 of 7, from 174 to 212: score 45.0, E = 1e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c +l+gHt++V++v++ p+ + l+++gS+D+t+k+W+ ek00114 174 DKCMmTLqGHTAAVWAVKILPE-QGLMLTGSADKTVKLWK 212 PF00400.22.ls: domain 5 of 7, from 214 to 251: score 24.1, E = 0.00045 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g c ++++gH++ V+ +a+ + + ++s+ D +i+ W ek00114 214 GRCErTFsGHEDCVRGLAILSE--TEFLSCANDASIRRWQ 251 PF00400.22.fs: domain 5 of 7, from 214 to 251: score 22.2, E = 2.8e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g c ++++gH++ V+ +a+ + + ++s+ D +i+ W ek00114 214 GRCErTFsGHEDCVRGLAILSE--TEFLSCANDASIRRWQ 251 PF00400.22.fs: domain 6 of 7, from 254 to 292: score 38.4, E = 7.4e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* gec+ v++gHt+ ++++++ p+ ++ +++ +D++++iW+ ek00114 254 GECLeVYyGHTNYIYSISVFPN-CRDFVTTAEDRSLRIWK 292 PF00400.22.ls: domain 6 of 7, from 254 to 292: score 40.4, E = 5.7e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* gec+ v++gHt+ ++++++ p+ ++ +++ +D++++iW+ ek00114 254 GECLeVYyGHTNYIYSISVFPN-CRDFVTTAEDRSLRIWK 292 PF00400.22.fs: domain 7 of 7, from 294 to 331: score 14.1, E = 0.0052 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* gec ++++ +++c+++ + ++ g +Dg i+++ ek00114 294 GECAqTIrLPAQSIWCCCVLDN--GDIVVGASDGIIRVFT 331 PF09070.1.ls: domain 1 of 1, from 377 to 494: score 260.4, E = 3.3e-75 *->qkpGtkeGqvkmVKnpDnGvvEAYqWsasegrWekIGdVVdspagss ++pGt+eGq+++++ +++vEAYqWs+segrW+kIGdVV+s+ g++ ek00114 377 NEPGTREGQTRLIRD--GEKVEAYQWSVSEGRWIKIGDVVGSS-GAN 420 qqTSaqqreKklYeGkelFqGyYDYVFDVDieDGkPpLKLPYNvgdNPye qqTS+ K+lYeGke +DYVF++D+++G+P +KLPYN +d+P++ ek00114 421 QQTSG----KVLYEGKE-----FDYVFSIDVNEGGPSYKLPYNTSDDPWL 461 aAqkFlakNevLPqsYldQVvnFIlkNtkgvtlg<-* +A++Fl+kN+ L++++ldQV++FI++Ntkg+ lg ek00114 462 TAYNFLQKND-LNPMFLDQVAKFIIDNTKGQMLG 494 PF09070.1.fs: domain 1 of 1, from 377 to 494: score 258.5, E = 1.2e-74 *->qkpGtkeGqvkmVKnpDnGvvEAYqWsasegrWekIGdVVdspagss ++pGt+eGq+++++ +++vEAYqWs+segrW+kIGdVV+s+ g++ ek00114 377 NEPGTREGQTRLIRD--GEKVEAYQWSVSEGRWIKIGDVVGSS-GAN 420 qqTSaqqreKklYeGkelFqGyYDYVFDVDieDGkPpLKLPYNvgdNPye qqTS+ K+lYeGke +DYVF++D+++G+P +KLPYN +d+P++ ek00114 421 QQTSG----KVLYEGKE-----FDYVFSIDVNEGGPSYKLPYNTSDDPWL 461 aAqkFlakNevLPqsYldQVvnFIlkNtkgvtlg<-* +A++Fl+kN+ L++++ldQV++FI++Ntkg+ lg ek00114 462 TAYNFLQKND-LNPMFLDQVAKFIIDNTKGQMLG 494 PF08324.1.ls: domain 1 of 1, from 566 to 824: score 382.6, E = 5.6e-112 *->kvfPvktyltfktanldkilkKLkelNsklsaenkelkLsddelnal +fP+k+++tf++an+ +il+KLkelN+++ ++e+kL++d+l l ek00114 566 IYFPKKEAVTFDQANPTQILGKLKELNGTA---PEEKKLTEDDLILL 609 esllselkesstaeatladlealtiyllkiltsWPednrFPalDilRllv e++ls++++ss+++ ++ ++ +l+++ ++Ped++FPalDilRl++ ek00114 610 EKILSLICNSSSEK-----PTVQQLQILWKAINCPEDIVFPALDILRLSI 654 rkppvasllcnedefeafkLVadlistlielgssspsdeaknpanqlltL ++p+v++ +cne+e+ a++ s+li+l++++ ++panqll+L ek00114 655 KHPSVNENFCNEKEG------AQFSSHLINLLNPK-----GKPANQLLAL 693 RclaNlFsnqagrnlllskddpdLvynsildlisvlkssslakqnkNlqi R+++N+F+ qag +l++s++ s++++ +lks+s nkN++i ek00114 694 RTFCNCFVGQAGQKLMMSQRE------SLMSHAIELKSGS----NKNIHI 733 AlATLllNlsvlllennaletldvealaqEllssileakygslleevsde AlATL+lN+sv++++++ ++e++aq +ls+i++ +le+v+d ek00114 734 ALATLALNYSVCFHKDH-----NIEGKAQ-CLSLIST-----ILEVVQDL 772 EAlYRlLvAlGtLiYvsgdptavqlakskyFvlgvsniakkkkraskekr EA++RlLvAlGtLi s d++avqlaks lgv++++kk++++s++++ ek00114 773 EATFRLLVALGTLI--SDDSNAVQLAKS----LGVDSQIKKYSSVSEPAK 816 fkevardi<-* + e++r i ek00114 817 VSECCRFI 824 PF08324.1.fs: domain 1 of 1, from 566 to 824: score 380.7, E = 2.1e-111 *->kvfPvktyltfktanldkilkKLkelNsklsaenkelkLsddelnal +fP+k+++tf++an+ +il+KLkelN+++ ++e+kL++d+l l ek00114 566 IYFPKKEAVTFDQANPTQILGKLKELNGTA---PEEKKLTEDDLILL 609 esllselkesstaeatladlealtiyllkiltsWPednrFPalDilRllv e++ls++++ss+++ ++ ++ +l+++ ++Ped++FPalDilRl++ ek00114 610 EKILSLICNSSSEK-----PTVQQLQILWKAINCPEDIVFPALDILRLSI 654 rkppvasllcnedefeafkLVadlistlielgssspsdeaknpanqlltL ++p+v++ +cne+e+ a++ s+li+l++++ ++panqll+L ek00114 655 KHPSVNENFCNEKEG------AQFSSHLINLLNPK-----GKPANQLLAL 693 RclaNlFsnqagrnlllskddpdLvynsildlisvlkssslakqnkNlqi R+++N+F+ qag +l++s++ s++++ +lks+s nkN++i ek00114 694 RTFCNCFVGQAGQKLMMSQRE------SLMSHAIELKSGS----NKNIHI 733 AlATLllNlsvlllennaletldvealaqEllssileakygslleevsde AlATL+lN+sv++++++ ++e++aq +ls+i++ +le+v+d ek00114 734 ALATLALNYSVCFHKDH-----NIEGKAQ-CLSLIST-----ILEVVQDL 772 EAlYRlLvAlGtLiYvsgdptavqlakskyFvlgvsniakkkkraskekr EA++RlLvAlGtLi s d++avqlaks lgv++++kk++++s++++ ek00114 773 EATFRLLVALGTLI--SDDSNAVQLAKS----LGVDSQIKKYSSVSEPAK 816 fkevardi<-* + e++r i ek00114 817 VSECCRFI 824 //