hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-23470677/chunk_1/iprscan-20080808-23470677.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00118 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 388.6 8.7e-114 1 PF00069.15.fs Protein kinase domain 386.7 3.2e-113 1 PF00169.19.fs PH domain 81.8 2e-24 1 PF00169.19.ls PH domain 83.8 4.9e-22 1 PF07714.7.fs Protein tyrosine kinase 56.2 3.2e-16 1 PF00433.14.fs Protein kinase C terminal domain 46.2 3.6e-13 1 PF00433.14.ls Protein kinase C terminal domain 48.2 2.5e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 18 120 .. 1 92 [] 81.8 2e-24 PF00169.19.ls 1/1 18 120 .. 1 92 [] 83.8 4.9e-22 PF00069.15.fs 1/1 162 420 .. 1 287 [] 386.7 3.2e-113 PF07714.7.fs 1/1 162 373 .. 1 230 [. 56.2 3.2e-16 PF00069.15.ls 1/1 162 420 .. 1 287 [] 388.6 8.7e-114 PF00433.14.ls 1/1 440 490 .. 1 47 [] 48.2 2.5e-11 PF00433.14.fs 1/1 440 490 .. 1 47 [] 46.2 3.6e-13 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 18 to 120: score 81.8, E = 2e-24 *->vikeGwLlkkg.gkkswkkRyfvLfd.dvLlyykdkk......kkpk ++keGwL+k+g+++k+w++Ryf L+++++++ yk+++++ ++++ p ek00118 18 IVKEGWLHKRGeYIKTWRPRYFLLKNdGTFIGYKERPqdvdqrEAPL 64 gsipLsgiqvtkvpdnkrkncFeirt.dr...etlllqaeseeerkeWvk +++ ++q++k++++ r+n+F ir+ ++++ ++ +++ e++eer+eW + ek00118 65 NNFSVAQCQLMKTERP-RPNTFIIRClQWttvIERTFHVETPEEREEWTT 113 aiqsair<-* aiq ++ ek00118 114 AIQTVAD 120 PF00169.19.ls: domain 1 of 1, from 18 to 120: score 83.8, E = 4.9e-22 *->vikeGwLlkkg.gkkswkkRyfvLfd.dvLlyykdkk......kkpk ++keGwL+k+g+++k+w++Ryf L+++++++ yk+++++ ++++ p ek00118 18 IVKEGWLHKRGeYIKTWRPRYFLLKNdGTFIGYKERPqdvdqrEAPL 64 gsipLsgiqvtkvpdnkrkncFeirt.dr...etlllqaeseeerkeWvk +++ ++q++k++++ r+n+F ir+ ++++ ++ +++ e++eer+eW + ek00118 65 NNFSVAQCQLMKTERP-RPNTFIIRClQWttvIERTFHVETPEEREEWTT 113 aiqsair<-* aiq ++ ek00118 114 AIQTVAD 120 PF00069.15.fs: domain 1 of 1, from 162 to 420: score 386.7, E = 3.2e-113 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +e l+ lG+G+fG+V + k+k tg+ +A+Ki+kk+ + k + ++++ ek00118 162 FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTL 208 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse + E ++l++ +Hp+ l+++f+++d+l++V+Ey++gG +Lf +ls ek00118 209 T-ENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG----ELFFHLS- 252 trrkgpllfsedeakkialQilrgleYLHs.ngiiHRDLKPeNILldnng r++++ sed a+++ +i+++l+YLHs++++++RDLK+eN++ld++g ek00118 253 --RERVF--SEDRARFYGAEIVSALDYLHSeKNVVYRDLKLENLMLDKDG 298 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv ++ Ki+DFGl+k ++ + +++tf+GTp+Y+APEvl +n+yg++v ek00118 299 HI----KITDFGLCKEG-IkDGAtMKTFCGTPEYLAPEVLE-DNDYGRAV 342 DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds D+W+lGv++ye+++G++PF+++ d+ +l+++il+++++f++ ek00118 343 DWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFELILMEEIRFPRTLG-- 385 isrsefrrlpnlseeakdLikkcLnkDPskRlt.....aeeilqHPwf<- +eak+L++++L+kDP++Rl++++++a+ei+qH +f ek00118 386 -------------PEAKSLLSGLLKKDPKQRLGggsedAKEIMQHRFF 420 * ek00118 - - PF07714.7.fs: domain 1 of 1, from 162 to 373: score 56.2, E = 3.2e-16 *->lklgkkLGeGaFGeVyk......GtlkgsgdgteikVAVKtL.ke.i ++ +k LG+G FG+V + +++ +G+++ A K+L+ke i ek00118 162 FEYLKLLGKGTFGKVILvkekatGRYY----------AMKILkKEvI 198 gaseeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVt a +e + l E +++ + +Hp + L + l+ V+ ek00118 199 VAKDE---VAHTLTENRVLQNS-RHPFLTALKYSFQT-HDR----LCFVM 239 EymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLes.knfvHRD Ey+ gG L +L + +r ++ + + ++i ++++YL+s+kn v RD ek00118 240 EYANGGELFFHLSR---ERVFSEDRARFYGAEIVSALDYLHSeKNVVYRD 286 LAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWm....A L N ++++++++KI+DFGL++ k g ++ +++ A ek00118 287 LKLENLMLDKDGHIKITDFGLCKEG-------IKDGATMKTFCGTpeylA 329 PEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlell<-* PE+l ++ + + D W GV+++E++ G+ P +++ + e + el+ ek00118 330 PEVLEDNDYGRAVDWWGLGVVMYEMMC-GRLP-FYNQDHEKLFELI 373 PF00069.15.ls: domain 1 of 1, from 162 to 420: score 388.6, E = 8.7e-114 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +e l+ lG+G+fG+V + k+k tg+ +A+Ki+kk+ + k + ++++ ek00118 162 FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTL 208 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse + E ++l++ +Hp+ l+++f+++d+l++V+Ey++gG +Lf +ls ek00118 209 T-ENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG----ELFFHLS- 252 trrkgpllfsedeakkialQilrgleYLHs.ngiiHRDLKPeNILldnng r++++ sed a+++ +i+++l+YLHs++++++RDLK+eN++ld++g ek00118 253 --RERVF--SEDRARFYGAEIVSALDYLHSeKNVVYRDLKLENLMLDKDG 298 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv ++ Ki+DFGl+k ++ + +++tf+GTp+Y+APEvl +n+yg++v ek00118 299 HI----KITDFGLCKEG-IkDGAtMKTFCGTPEYLAPEVLE-DNDYGRAV 342 DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds D+W+lGv++ye+++G++PF+++ d+ +l+++il+++++f++ ek00118 343 DWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFELILMEEIRFPRTLG-- 385 isrsefrrlpnlseeakdLikkcLnkDPskRlt.....aeeilqHPwf<- +eak+L++++L+kDP++Rl++++++a+ei+qH +f ek00118 386 -------------PEAKSLLSGLLKKDPKQRLGggsedAKEIMQHRFF 420 * ek00118 - - PF00433.14.ls: domain 1 of 1, from 440 to 490: score 48.2, E = 2.5e-11 *->kvksptDTsNFDpeFTsepptltpp...pdsr.lssgkqleFrGFtY +v+s+tDT++FD+eFT + +t+tpp+++++ + s+ +F +F+Y ek00118 440 QVTSETDTRYFDEEFTAQMITITPPdqdDSMEcVDSERRPHFPQFSY 486 vnpe<-* +++ ek00118 487 SASG 490 PF00433.14.fs: domain 1 of 1, from 440 to 490: score 46.2, E = 3.6e-13 *->kvksptDTsNFDpeFTsepptltpp...pdsr.lssgkqleFrGFtY +v+s+tDT++FD+eFT + +t+tpp+++++ + s+ +F +F+Y ek00118 440 QVTSETDTRYFDEEFTAQMITITPPdqdDSMEcVDSERRPHFPQFSY 486 vnpe<-* +++ ek00118 487 SASG 490 //