hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-23470677/chunk_1/iprscan-20080808-23470677.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00118 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 372.7 2.2e-107 1 SM00133 82.1 7e-20 1 SM00233 71.5 1e-16 1 SM00219 -1.1 4.6e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/1 18 122 .. 1 82 [] 71.5 1e-16 SM00219 1/1 162 420 .. 1 280 [] -1.1 4.6e-11 SM00220 1/1 162 420 .. 1 231 [] 372.7 2.2e-107 SM00133 1/1 421 488 .. 1 79 [] 82.1 7e-20 Alignments of top-scoring domains: SM00233: domain 1 of 1, from 18 to 122: score 71.5, E = 1e-16 *->vikeGwLlkks..k.swkkryfvLfn.gvLlyyksk........kpk ++keGwL+k++ ++w++ryf L+n+g+++ yk+++++ +++++p ek00118 18 IVKEGWLHKRGeyIkTWRPRYFLLKNdGTFIGYKERpqdvdqreAPL 64 gsipLsgcsvre.p.....cFeivt.dr....tlllqAeseeereeWvea +++ c++ +++++++++F i++ ++++ + +++ e++eereeW +a ek00118 65 NNFSVAQCQLMKtErprpnTFIIRClQWttviERTFHVETPEEREEWTTA 114 lqsaiaka<-* +q +++ + ek00118 115 IQTVADGL 122 SM00219: domain 1 of 1, from 162 to 420: score -1.1, E = 4.6e-11 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl + +k LG G FG+V + + k +++ A K Lk++ +++++ l ek00118 162 FEYLKLLGKGTFGKVILVKEKatgRYYAMKILKKEVivakdeVAHTL 208 rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld E +++ + +Hp + +L ++ + l+ vmEy+ gG L ek00118 209 TENRVLQNS--RHPFLTALKYSFQTH-------DRLCFVMEYANGGELFF 249 yLrknrpklslsdLlsfAlQIAkGMeYLesk.nfvHRDLAARNcLvgenk +L + r +s + + I + +YL+s +n+v RDL N ++++++ ek00118 250 HLSRERV-FSEDRARFYGAEIVSALDYLHSEkNVVYRDLKLENLMLDKDG 298 vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkd ++KI+DFGL++++ d +k+ +g +APE+l d ek00118 299 HIKITDFGLCKEGIKD-------GATMKTF--CGTP----EYLAPEVLED 335 gkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRl + + + D W GV+++E++ G P ++ + e ++e++ + + ek00118 336 NDYGRAVDWWGLGVVMYEMM-CGRLPFYN-----QDHEKLFELILMEEIR 379 pkPendlpiSsvtCPdelYdlMlqCWaedPedRP.....tFsel..verl + +e +l + + dP++R +++++ +e+ +++++ ek00118 380 FPRTL---------GPEAKSLLSGLLKKDPKQRLgggseDAKEImqHRFF 420 <-* ek00118 - - SM00220: domain 1 of 1, from 162 to 420: score 372.7, E = 2.2e-107 *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril +e lk+lGkG+FGkV l+++k tgr++A+K++k++ +++ ++l ek00118 162 FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKkevivakdevAHTL 208 rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr E ++L++++HP++ L+++f+++d+l++VmEy++G G+Lf +l + + ek00118 209 TENRVLQNsRHPFLTALKYSFQThDRLCFVMEYANG--GELFFHLSRERV 256 rglrkvlsE.earfyfrQilsaLeYLHsq.gIiHRDLKPeNiLLds..hv +sE++arfy ++i+saL+YLHs +++++RDLK eN++Ld+++h+ ek00118 257 ------FSEdRARFYGAEIVSALDYLHSEkNVVYRDLKLENLMLDKdgHI 300 KlaDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGc K++DFGl+++ +++ + +tf+GTpeY+APEvl+++ Yg+ avD+W lG+ ek00118 301 KITDFGLCKEGikdgatmKTFCGTPEYLAPEVLednDYGR-AVDWWGLGV 349 ilyElltGkpPFp..qldlifkkig..........SpeakdLikklLvkd ++yE+++G+ PF++++++++f++i+ ++ + +++ peak+L+++lL+kd ek00118 350 VMYEMMCGRLPFYnqDHEKLFELILmeeirfprtlGPEAKSLLSGLLKKD 399 PekRlta.eaLedeldikaHPff<-* P++Rl+ + + +i++H ff ek00118 400 PKQRLGGgSEDA--KEIMQHRFF 420 SM00133: domain 1 of 1, from 421 to 488: score 82.1, E = 7e-20 *->rgiDWdkLenekkeiePPFkPkikeVyAsptDtsNFDkeFteetpv. +gi W++++ k++ PPFkP+++ s+tDt++FD+eFt + ++ ek00118 421 AGIVWQHVYE--KKLSPPFKPQVT----SETDTRYFDEEFTAQMITi 461 ltpvdsalsnsiqqeeaeteippdpFrGFsyvf<-* p+++ ++++++ e +++F++Fsy++ ek00118 462 TPPDQDDSMECVDSER------RPHFPQFSYSA 488 //