hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-23535747/chunk_1/iprscan-20080808-23535747.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ek00129
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03166.5.ls MH2 domain                                     493.0   3.2e-145   1
PF03166.5.fs MH2 domain                                     491.0   1.3e-144   1
PF03165.7.ls MH1 domain                                     223.0    6.1e-64   1
PF03165.7.fs MH1 domain                                     221.2    2.2e-63   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03165.7.fs   1/1      39   143 ..     1   120 []   221.2  2.2e-63
PF03165.7.ls   1/1      39   143 ..     1   120 []   223.0  6.1e-64
PF03166.5.fs   1/1     323   538 ..     1   228 []   491.0 1.3e-144
PF03166.5.ls   1/1     323   538 ..     1   228 []   493.0 3.2e-145

Alignments of top-scoring domains:
PF03165.7.fs: domain 1 of 1, from 39 to 143: score 221.2, E = 2.2e-63
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIpnrs
                      e+++++a+esL+KKLK+kk++l++L++A++++G++p +kCvtI+ r+
     ek00129    39    ETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHP-SKCVTIQ-RT 83   

                   LdGRLqvnaqrkglPHviyCLRqadRlwRWPDLqsqnELKaiptCeyagf
                   LdGRLqv a+rkg+PHviy+     RlwRWPDL ++nELK++++C+ya f
     ek00129    84 LDGRLQV-AGRKGFPHVIYA-----RLWRWPDL-HKNELKHVKYCQYA-F 125  

                   eskkdeaCnPyvCiNPYHysRve<-*
                   ++k+d+     vC+NPYHy+Rv+   
     ek00129   126 DLKCDS-----VCVNPYHYERVV    143  

PF03165.7.ls: domain 1 of 1, from 39 to 143: score 223.0, E = 6.1e-64
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIpnrs
                      e+++++a+esL+KKLK+kk++l++L++A++++G++p +kCvtI+ r+
     ek00129    39    ETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHP-SKCVTIQ-RT 83   

                   LdGRLqvnaqrkglPHviyCLRqadRlwRWPDLqsqnELKaiptCeyagf
                   LdGRLqv a+rkg+PHviy+     RlwRWPDL ++nELK++++C+ya f
     ek00129    84 LDGRLQV-AGRKGFPHVIYA-----RLWRWPDL-HKNELKHVKYCQYA-F 125  

                   eskkdeaCnPyvCiNPYHysRve<-*
                   ++k+d+     vC+NPYHy+Rv+   
     ek00129   126 DLKCDS-----VCVNPYHYERVV    143  

PF03166.5.fs: domain 1 of 1, from 323 to 538: score 491.0, E = 1.3e-144
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      +++pe+WcsIaY+E++++VGEtfkv+++ +++vtvDG++   Dpsg+
     ek00129   323    HPAPEYWCSIAYFEMDVQVGETFKVPSS-CPIVTVDGYV---DPSGG 365  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                     dRfCLGqLsNv+R  +eaie++R hIGkGV+L++k++G+  Vwv+++S
     ek00129   366 --DRFCLGQLSNVHR--TEAIERARLHIGKGVQLECKGEGD--VWVRCLS 409  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   d+++FVqS+yLd++aG ++p+d+VhK++P+a++KvFd+r+++++++q+a+
     ek00129   410 DHAVFVQSYYLDREAG-RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAA 458  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                   ++++A+aaQAAAvaG++p+++++++++++++L+++A++gvd+L+++C++R
     ek00129   459 TAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILR 508  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   +SFVKGWG+dY +RQ+I++tPCWiE+hL+r+   
     ek00129   509 MSFVKGWGPDY-PRQSIKETPCWIEIHLHRA    538  

PF03166.5.ls: domain 1 of 1, from 323 to 538: score 493.0, E = 3.2e-145
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      +++pe+WcsIaY+E++++VGEtfkv+++ +++vtvDG++   Dpsg+
     ek00129   323    HPAPEYWCSIAYFEMDVQVGETFKVPSS-CPIVTVDGYV---DPSGG 365  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                     dRfCLGqLsNv+R  +eaie++R hIGkGV+L++k++G+  Vwv+++S
     ek00129   366 --DRFCLGQLSNVHR--TEAIERARLHIGKGVQLECKGEGD--VWVRCLS 409  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   d+++FVqS+yLd++aG ++p+d+VhK++P+a++KvFd+r+++++++q+a+
     ek00129   410 DHAVFVQSYYLDREAG-RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAA 458  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                   ++++A+aaQAAAvaG++p+++++++++++++L+++A++gvd+L+++C++R
     ek00129   459 TAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIGVDDLRRLCILR 508  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   +SFVKGWG+dY +RQ+I++tPCWiE+hL+r+   
     ek00129   509 MSFVKGWGPDY-PRQSIKETPCWIEIHLHRA    538  

//