hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-07101418/chunk_1/iprscan-20090618-07101418.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00155 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00089.16.fs Trypsin 321.4 6e-101 1 PF00051.9.fs Kringle domain 321.8 1.6e-96 2 PF00051.9.ls Kringle domain 325.6 7.8e-95 2 PF00089.16.ls Trypsin 323.2 4.2e-94 1 PF00039.9.fs Fibronectin type I domain 61.5 3.5e-17 2 PF00039.9.ls Fibronectin type I domain 63.4 6.7e-16 1 PF00008.17.fs EGF-like domain 29.6 2.2e-07 1 PF00008.17.ls EGF-like domain 31.4 2.9e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00039.9.ls 1/1 68 105 .. 1 41 [] 63.4 6.7e-16 PF00039.9.fs 1/2 68 105 .. 1 41 [] 61.5 3.5e-17 PF00008.17.fs 1/1 113 146 .. 1 38 [] 29.6 2.2e-07 PF00008.17.ls 1/1 113 146 .. 1 38 [] 31.4 2.9e-06 PF00051.9.ls 1/2 154 235 .. 1 85 [] 143.9 3.9e-40 PF00051.9.fs 1/2 154 235 .. 1 85 [] 142.0 2.7e-42 PF00051.9.ls 2/2 242 323 .. 1 85 [] 181.7 1.6e-51 PF00051.9.fs 2/2 242 323 .. 1 85 [] 179.8 1.1e-53 PF00089.16.ls 1/1 338 583 .. 1 258 [] 323.2 4.2e-94 PF00089.16.fs 1/1 338 583 .. 1 258 [] 321.4 6e-101 Alignments of top-scoring domains: PF00039.9.ls: domain 1 of 1, from 68 to 105: score 63.4, E = 6.7e-16 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* C+De+T+++Yq++++W+Rp +r+++++yC+C ++G+++C ek00155 68 CRDEKTQMIYQQHQSWLRPVLRSNRVEYCWC---NSGRAQC 105 PF00039.9.fs: domain 1 of 2, from 68 to 105: score 61.5, E = 3.5e-17 *->CfDedTgttYqiGdtWeRpyqrGhmlqyCtClGnGrGewkC<-* C+De+T+++Yq++++W+Rp +r+++++yC+C ++G+++C ek00155 68 CRDEKTQMIYQQHQSWLRPVLRSNRVEYCWC---NSGRAQC 105 PF00008.17.fs: domain 1 of 1, from 113 to 146: score 29.6, E = 2.2e-07 *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-* Cs+ C ngGtC++ +++ C+Cp+G ++Gk C ek00155 113 CSEP--RCFNGGTCQQALyfSDFVCQCPEG----FAGKCC 146 PF00008.17.ls: domain 1 of 1, from 113 to 146: score 31.4, E = 2.9e-06 *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-* Cs+ C ngGtC++ +++ C+Cp+G ++Gk C ek00155 113 CSEP--RCFNGGTCQQALyfSDFVCQCPEG----FAGKCC 146 PF00051.9.ls: domain 1 of 2, from 154 to 235: score 143.9, E = 3.9e-40 *->CyqGnGesYRGtvstTeSGapCQaWdsqtphrHskYtpenfpakgLg Cy+++G sYRGt+st eSGa+C +W+s + + + Y ++++a+ Lg ek00155 154 CYEDQGISYRGTWSTAESGAECTNWNSSALAQ-KPYSGRRPDAIRLG 199 eGkHNYCRNPDGderGPWCYTltdprvrwEYCsdiprC<-* +G+HNYCRNPD+d++ PWCY+++ +++ E+Cs p+C ek00155 200 LGNHNYCRNPDRDSK-PWCYVFKAGKYSSEFCS-TPAC 235 PF00051.9.fs: domain 1 of 2, from 154 to 235: score 142.0, E = 2.7e-42 *->CyqGnGesYRGtvstTeSGapCQaWdsqtphrHskYtpenfpakgLg Cy+++G sYRGt+st eSGa+C +W+s + + + Y ++++a+ Lg ek00155 154 CYEDQGISYRGTWSTAESGAECTNWNSSALAQ-KPYSGRRPDAIRLG 199 eGkHNYCRNPDGderGPWCYTltdprvrwEYCsdiprC<-* +G+HNYCRNPD+d++ PWCY+++ +++ E+Cs p+C ek00155 200 LGNHNYCRNPDRDSK-PWCYVFKAGKYSSEFCS-TPAC 235 PF00051.9.ls: domain 2 of 2, from 242 to 323: score 181.7, E = 1.6e-51 *->CyqGnGesYRGtvstTeSGapCQaWdsqtphrHskYtpenfpakgLg Cy+GnG YRGt+s TeSGa+C++W+s++++ ++Yt++n+ a+ Lg ek00155 242 CYFGNGSAYRGTHSLTESGASCLPWNSMILIG-KVYTAQNPSAQALG 287 eGkHNYCRNPDGderGPWCYTltdprvrwEYCsdiprC<-* +GkHNYCRNPDGd++ PWC++l++ r++wEYC d+p+C ek00155 288 LGKHNYCRNPDGDAK-PWCHVLKNRRLTWEYC-DVPSC 323 PF00051.9.fs: domain 2 of 2, from 242 to 323: score 179.8, E = 1.1e-53 *->CyqGnGesYRGtvstTeSGapCQaWdsqtphrHskYtpenfpakgLg Cy+GnG YRGt+s TeSGa+C++W+s++++ ++Yt++n+ a+ Lg ek00155 242 CYFGNGSAYRGTHSLTESGASCLPWNSMILIG-KVYTAQNPSAQALG 287 eGkHNYCRNPDGderGPWCYTltdprvrwEYCsdiprC<-* +GkHNYCRNPDGd++ PWC++l++ r++wEYC d+p+C ek00155 288 LGKHNYCRNPDGDAK-PWCHVLKNRRLTWEYC-DVPSC 323 PF00089.16.ls: domain 1 of 1, from 338 to 583: score 323.2, E = 4.2e-94 *->IvGGreaqpgsfqsPwqvslqirgggg.srkhfCGGsLisenwVLTA I GG a + s+ Pwq++++ +++ ++ +++CGG+Lis++w+L+A ek00155 338 IKGGLFADIASH--PWQAAIFAKHRRSpGERFLCGGILISSCWILSA 382 AHCvsgsaskpassvqVslslrlGa.hnlslnegteqkfdvaktiivHpn AHC+ + + p++ ++V +lG ++ ++ +e+ eqkf+v+k +ivH+ ek00155 383 AHCFQE--RFPPHHLTV----ILGRtYRVVPGEE-EQKFEVEK-YIVHKE 424 ynpdtldgeYdnDiALlkLssp...gvtlsdtvqpicLpsttassdlpvG ++ dt YdnDiALl+L+s+++++++ s+ v+++cLp a+ lp++ ek00155 425 FDDDT----YDNDIALLQLKSDssrCAQESSVVRTVCLPP--ADLQLPDW 468 ttctvsGWGnrptk.ng..lpdtLqevnvpvvsretCrsaylyggttDKi t+c sG+G+ + + + +++ L+e++v+++++++C+s++l + t ek00155 469 TECELSGYGK--HEaLSpfYSERLKEAHVRLYPSSRCTSQHLLNRT---- 512 efvtdnmiCagap.......ggkdaCqGDSGGPLvcsgggvgrwelvGiv vtdnm+Cag ++++++ + daCqGDSGGPLvc++ gr++lvGi+ ek00155 513 --VTDNMLCAGDTrsggpqaNLHDACQGDSGGPLVCLND--GRMTLVGII 558 SwGsygCargnkPGvytrVssyldWI<-* SwG gC+++ PGvyt+V++yldWI ek00155 559 SWG-LGCGQKDVPGVYTKVTNYLDWI 583 PF00089.16.fs: domain 1 of 1, from 338 to 583: score 321.4, E = 6e-101 *->IvGGreaqpgsfqsPwqvslqirgggg.srkhfCGGsLisenwVLTA I GG a + s+ Pwq++++ +++ ++ +++CGG+Lis++w+L+A ek00155 338 IKGGLFADIASH--PWQAAIFAKHRRSpGERFLCGGILISSCWILSA 382 AHCvsgsaskpassvqVslslrlGa.hnlslnegteqkfdvaktiivHpn AHC+ + + p++ ++V +lG ++ ++ +e+ eqkf+v+k +ivH+ ek00155 383 AHCFQE--RFPPHHLTV----ILGRtYRVVPGEE-EQKFEVEK-YIVHKE 424 ynpdtldgeYdnDiALlkLssp...gvtlsdtvqpicLpsttassdlpvG ++ dt YdnDiALl+L+s+++++++ s+ v+++cLp a+ lp++ ek00155 425 FDDDT----YDNDIALLQLKSDssrCAQESSVVRTVCLPP--ADLQLPDW 468 ttctvsGWGnrptk.ng..lpdtLqevnvpvvsretCrsaylyggttDKi t+c sG+G+ + + + +++ L+e++v+++++++C+s++l + t ek00155 469 TECELSGYGK--HEaLSpfYSERLKEAHVRLYPSSRCTSQHLLNRT---- 512 efvtdnmiCagap.......ggkdaCqGDSGGPLvcsgggvgrwelvGiv vtdnm+Cag ++++++ + daCqGDSGGPLvc++ gr++lvGi+ ek00155 513 --VTDNMLCAGDTrsggpqaNLHDACQGDSGGPLVCLND--GRMTLVGII 558 SwGsygCargnkPGvytrVssyldWI<-* SwG gC+++ PGvyt+V++yldWI ek00155 559 SWG-LGCGQKDVPGVYTKVTNYLDWI 583 //