hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-07101418/chunk_1/iprscan-20090618-07101418.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ek00155
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00020                                                 290.4    1.3e-82   1
SM00130                                                 267.2    1.3e-75   2
SM00058                                                  62.3    6.2e-14   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00058     1/1      68   110 ..     1    46 []    62.3  6.2e-14
SM00130     1/2     152   237 ..     1    90 []   126.8  2.4e-33
SM00130     2/2     240   325 ..     1    90 []   140.4  1.9e-37
SM00020     1/1     337   583 ..     1   226 []   290.4  1.3e-82

Alignments of top-scoring domains:
SM00058: domain 1 of 1, from 68 to 110: score 62.3, E = 6.2e-14
                   *->CfDeqtgttYrvGdtWeRphegsghvlqCtClGggrGewkCdpvav<
                      C+De+t++ Y+++++W+Rp ++s++v++C+C  g+   ++C++v+v 
     ek00155    68    CRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGR---AQCHSVPV  110  

                   -*
                     
     ek00155     -    -    

SM00130: domain 1 of 2, from 152 to 237: score 126.8, E = 2.4e-33
                   *->rdCyagddnGesYRGtvstTkSGkpCQrWdsqtphlhrf.tpesfpe
                      ++Cy +  +G sYRGt+st +SG++C +W+s  + l +++++ ++p+
     ek00155   152    ATCYED--QGISYRGTWSTAESGAECTNWNS--SALAQKpYSGRRPD 194  

                   agqLGlleeNYCRNPDGdsegPWCYT.tdpnvrdweyCdipqCes<-*
                   a  LGl+++NYCRNPD  + +PWCY+ +  +    e+C+ p+C++   
     ek00155   195 AIRLGLGNHNYCRNPDR-DSKPWCYVfKAGKYS-SEFCSTPACSE    237  

SM00130: domain 2 of 2, from 240 to 325: score 140.4, E = 1.9e-37
                   *->rdCyagddnGesYRGtvstTkSGkpCQrWdsqtphlhrftpesfpea
                      +dCy g  nG  YRGt s T+SG++C++W+s+  ++ + + + +p a
     ek00155   240    SDCYFG--NGSAYRGTHSLTESGASCLPWNSM-ILIGKVYTAQNPSA 283  

                   gqLGlleeNYCRNPDGdsegPWCYT.tdpnvrdweyCdipqCes<-*
                    +LGl+++NYCRNPDG + +PWC++ ++++++ weyCd+p+C+    
     ek00155   284 QALGLGKHNYCRNPDG-DAKPWCHVlKNRRLT-WEYCDVPSCST    325  

SM00020: domain 1 of 1, from 337 to 583: score 290.4, E = 1.3e-82
                   *->RIVGGseakigsfPWqvsLq............CGGSLIsprwVLTAA
                      RI GG  a+i s+PWq++++ +++++++ +  CGG LIs++w+L+AA
     ek00155   337    RIKGGLFADIASHPWQAAIFakhrrspgerflCGGILISSCWILSAA 383  

                   HC..........rVrlGshdlssgeeteggprldspggqvikVskiievH
                   HC + + ++++ +V+lG++++ +++e e          q+++V+k+i vH
     ek00155   384 HCfqerfpphhlTVILGRTYRVVPGEEE----------QKFEVEKYI-VH 422  

                   pnYn.....NDIALLkLkep....vtlsdsntvrPicLPssneiktsegn
                     +++++ +NDIALL+Lk+ +++ ++ s+   vr++cLP+        + 
     ek00155   423 KEFDddtydNDIALLQLKSDssrcAQESS--VVRTVCLPPA-------DL 463  

                   tvpaGttctVsGWGrtsegpeesgggslpdvLqevnvpivsnetCr....
                    +p+ t+c  sG+G+ +       ++ ++  L+e++v + + ++C +++ 
     ek00155   464 QLPDWTECELSGYGKHEAL-----SPFYSERLKEAHVRLYPSSRCTsqhl 508  

                   ........MlCAGyleggn.tpgGkDaCqGDSGGPLvc......vLvGiV
                    +++ +++MlCAG+ ++g +    +DaCqGDSGGPLvc ++++ +LvGi+
     ek00155   509 lnrtvtdnMLCAGDTRSGGpQANLHDACQGDSGGPLVClndgrmTLVGII 558  

                   SWGssslygCarpnkPGVYTrVssyldWI<-*
                   SWG     gC++++ PGVYT+V++yldWI   
     ek00155   559 SWG----LGCGQKDVPGVYTKVTNYLDWI    583  

//