hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-00063680/chunk_1/iprscan-20080809-00063680.nocrc
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Query sequence: ek00165
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF01556.9.ls  DnaJ C terminal region                    143.6    4.9e-40   1
PF00226.21.fs DnaJ domain                               135.6    1.1e-39   1
PF01556.9.fs  DnaJ C terminal region                    141.6      2e-39   1
PF00226.21.ls DnaJ domain                               137.4    3.5e-38   1
PF00684.9.fs  DnaJ central domain (4 repeats)            74.0    1.5e-21   1
PF00684.9.ls  DnaJ central domain (4 repeats)            75.9    1.2e-19   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00226.21.fs   1/1      91   153 ..     1    76 []   135.6  1.1e-39
PF00226.21.ls   1/1      91   153 ..     1    76 []   137.4  3.5e-38
PF00684.9.fs    1/1     221   301 ..     1    88 []    74.0  1.5e-21
PF00684.9.ls    1/1     221   301 ..     1    88 []    75.9  1.2e-19
PF01556.9.fs    1/1     305   426 ..     1   123 []   141.6    2e-39
PF01556.9.ls    1/1     305   426 ..     1   123 []   143.6  4.9e-40

Alignments of top-scoring domains:
PF00226.21.fs: domain 1 of 1, from 91 to 153: score 135.6, E = 1.1e-39
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae
                      dyY+iLGvpr+As++eIKKAY++LA+kyHPD N++dp          
     ek00165    91    DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP---------- 127  

                   skeeAeekFkeineAYevLSDpekRaiYD<-*
                      +A+ekF +++eAYevLSD+ kR++YD   
     ek00165   128 ---KAKEKFSQLAEAYEVLSDEVKRKQYD    153  

PF00226.21.ls: domain 1 of 1, from 91 to 153: score 137.4, E = 3.5e-38
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae
                      dyY+iLGvpr+As++eIKKAY++LA+kyHPD N++dp          
     ek00165    91    DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP---------- 127  

                   skeeAeekFkeineAYevLSDpekRaiYD<-*
                      +A+ekF +++eAYevLSD+ kR++YD   
     ek00165   128 ---KAKEKFSQLAEAYEVLSDEVKRKQYD    153  

PF00684.9.fs: domain 1 of 1, from 221 to 301: score 74.0, E = 1.5e-21
                   *->GvtkeIrlprqeeCdtChGsGAKkGtspktCptCnGsGiqirvqQgG
                      Gv+ke++++ +++C+ C+G+G ++Gt+++ C++C+GsG  + +   G
     ek00165   221    GVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINTG 265  

                   PgmffqvqqtCpdChGtGkiIkpKdpCksChGkGrvkkkKt<-*
                   P   f++++tC +C+G+G iI    pC  C+G+G  k+kK    
     ek00165   266 P---FVMRSTCRRCGGRGSIII--SPCVVCRGAGQAKQKKR    301  

PF00684.9.ls: domain 1 of 1, from 221 to 301: score 75.9, E = 1.2e-19
                   *->GvtkeIrlprqeeCdtChGsGAKkGtspktCptCnGsGiqirvqQgG
                      Gv+ke++++ +++C+ C+G+G ++Gt+++ C++C+GsG  + +   G
     ek00165   221    GVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINTG 265  

                   PgmffqvqqtCpdChGtGkiIkpKdpCksChGkGrvkkkKt<-*
                   P   f++++tC +C+G+G iI    pC  C+G+G  k+kK    
     ek00165   266 P---FVMRSTCRRCGGRGSIII--SPCVVCRGAGQAKQKKR    301  

PF01556.9.fs: domain 1 of 1, from 305 to 426: score 141.6, E = 2e-39
                   *->qrlRlaGeGeaGenGGppGDLYVvirVkeHkiFeRdGdDLycevpis
                      ++    + G+ +++  +  + ++++rV+++++F+RdG+D+++++ is
     ek00165   305    PVPAGVEDGQTVRMPVGKREIFITFRVQKSPVFRRDGADIHSDLFIS 351  

                   ftqAaLGgeveVPTLdGkvkLkIPaGTQsGkvfrLkGKGvpklnrgsgrG
                    +qA LGg+ + + L+  + ++IP+GTQ+ +++r+ GKG+p+  +++g+G
     ek00165   352 IAQALLGGTARAQGLYETINVTIPPGTQTDQKIRMGGKGIPRI-NSYGYG 400  

                   DLyVhVkVetPkkLseeQkeLLeela<-*
                   D+y+h+k+ +Pk+L+++Q+ L+  +a   
     ek00165   401 DHYIHIKIRVPKRLTSRQQSLILSYA    426  

PF01556.9.ls: domain 1 of 1, from 305 to 426: score 143.6, E = 4.9e-40
                   *->qrlRlaGeGeaGenGGppGDLYVvirVkeHkiFeRdGdDLycevpis
                      ++    + G+ +++  +  + ++++rV+++++F+RdG+D+++++ is
     ek00165   305    PVPAGVEDGQTVRMPVGKREIFITFRVQKSPVFRRDGADIHSDLFIS 351  

                   ftqAaLGgeveVPTLdGkvkLkIPaGTQsGkvfrLkGKGvpklnrgsgrG
                    +qA LGg+ + + L+  + ++IP+GTQ+ +++r+ GKG+p+  +++g+G
     ek00165   352 IAQALLGGTARAQGLYETINVTIPPGTQTDQKIRMGGKGIPRI-NSYGYG 400  

                   DLyVhVkVetPkkLseeQkeLLeela<-*
                   D+y+h+k+ +Pk+L+++Q+ L+  +a   
     ek00165   401 DHYIHIKIRVPKRLTSRQQSLILSYA    426  

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