hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-00130495/chunk_1/iprscan-20080809-00130495.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ek00172
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02177.7.fs Amyloid A4 extracellular domain                415.1     2e-199   1
PF02177.7.ls Amyloid A4 extracellular domain                417.0   2.4e-122   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02177.7.fs   1/1      52   214 ..     1   182 []   415.1   2e-199
PF02177.7.ls   1/1      52   214 ..     1   182 []   417.0 2.4e-122

Alignments of top-scoring domains:
PF02177.7.fs: domain 1 of 1, from 52 to 214: score 415.1, E = 2e-199
                   *->gaaeakaePQiAmlCGAGqirlnqhmneetGrWetDpsrtktGPtCL
                      g+++a+aePQiAm+CG    +ln+h+n++tG+We+Dp++tk   +C+
     ek00172    52    GTGFAVAEPQIAMFCG----KLNMHVNIQTGKWEPDPTGTK---SCF 91   

                   rdKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgALnrsqCkahph
                    +Ke+vLqYC+++YPelqITNv+Ea+q v+I++WCrr+   ++qCk+   
     ek00172    92 ETKEEVLQYCQEMYPELQITNVMEANQRVSIDNWCRRD---KKQCKSR-- 136  

                   hsViPFrCLvGEFvSdALLVPegCqFlHqermdqCeshqrWhqeakeaCs
                    +V PF+CLvGEFvSd+LLVPe+CqF+H erm++Ce hq+Wh+++keaC+
     ek00172   137 -FVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACL 185  

                   ekkskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                   ++      gm+l+s+gMLLPCG+D+F+G+E+VCCP   
     ek00172   186 TQ------GMTLYSYGMLLPCGVDQFHGTEYVCCP    214  

PF02177.7.ls: domain 1 of 1, from 52 to 214: score 417.0, E = 2.4e-122
                   *->gaaeakaePQiAmlCGAGqirlnqhmneetGrWetDpsrtktGPtCL
                      g+++a+aePQiAm+CG    +ln+h+n++tG+We+Dp++tk   +C+
     ek00172    52    GTGFAVAEPQIAMFCG----KLNMHVNIQTGKWEPDPTGTK---SCF 91   

                   rdKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgALnrsqCkahph
                    +Ke+vLqYC+++YPelqITNv+Ea+q v+I++WCrr+   ++qCk+   
     ek00172    92 ETKEEVLQYCQEMYPELQITNVMEANQRVSIDNWCRRD---KKQCKSR-- 136  

                   hsViPFrCLvGEFvSdALLVPegCqFlHqermdqCeshqrWhqeakeaCs
                    +V PF+CLvGEFvSd+LLVPe+CqF+H erm++Ce hq+Wh+++keaC+
     ek00172   137 -FVTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACL 185  

                   ekkskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                   ++      gm+l+s+gMLLPCG+D+F+G+E+VCCP   
     ek00172   186 TQ------GMTLYSYGMLLPCGVDQFHGTEYVCCP    214  

//