hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-00130495/chunk_1/iprscan-20080809-00130495.nocrc
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Query sequence: ek00172
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00006                                                 416.3   1.7e-120   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00006      1/1      52   214 ..     1   180 []   416.3 1.7e-120

Alignments of top-scoring domains:
SM00006: domain 1 of 1, from 52 to 214: score 416.3, E = 1.7e-120
                   *->gaaeakaePQiAmlCGrlnlhmnlqtseeGrWetDpsrtktGPtCLr
                      g+++a+aePQiAm+CG+ln+h+n+qt   G+We+Dp++tk+   C+ 
     ek00172    52    GTGFAVAEPQIAMFCGKLNMHVNIQT---GKWEPDPTGTKS---CFE 92   

                   dKedvLqYCrkaYPelqITNvvEasqpvkIedWCrrgrsnAAqCkghhhs
                   +Ke+vLqYC+++YPelqITNv+Ea+q v+I++WCrr+++   qCk+   +
     ek00172    93 TKEEVLQYCQEMYPELQITNVMEANQRVSIDNWCRRDKK---QCKSR--F 137  

                   ViPFrCLvGEFvSdALLVPegCqFlHqermdqCedhqrWhqeakeaCsek
                   V PF+CLvGEFvSd+LLVPe+CqF+H erm++Ce hq+Wh+++keaC+++
     ek00172   138 VTPFKCLVGEFVSDVLLVPEKCQFFHKERMEVCENHQHWHTVVKEACLTQ 187  

                   kskGnkgmilrsfgMLLPCGiDkFrGVEFVCCP<-*
                         gm+l+s+gMLLPCG+D+F+G+E+VCCP   
     ek00172   188 ------GMTLYSYGMLLPCGVDQFHGTEYVCCP    214  

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