hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-00192477/chunk_1/iprscan-20080809-00192477.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00180 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 254.3 2.3e-73 10 PF00400.22.fs WD domain, G-beta repeat 236.7 4.7e-68 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/10 66 104 .. 1 38 [] 20.4 8.8e-05 PF00400.22.ls 1/10 66 104 .. 1 38 [] 22.4 0.0015 PF00400.22.fs 2/10 154 193 .. 1 38 [] 21.9 3.3e-05 PF00400.22.ls 2/10 154 193 .. 1 38 [] 23.9 0.00052 PF00400.22.fs 3/10 197 235 .. 1 38 [] 46.0 5.4e-12 PF00400.22.ls 3/10 197 235 .. 1 38 [] 48.0 3e-11 PF00400.22.ls 4/10 242 280 .. 1 38 [] 38.6 2.1e-08 PF00400.22.fs 4/10 242 280 .. 1 38 [] 36.6 2.4e-09 PF00400.22.fs 5/10 328 368 .. 1 38 [] 33.7 1.6e-08 PF00400.22.ls 5/10 328 368 .. 1 38 [] 35.7 1.5e-07 PF00400.22.fs 7/10 469 491 .. 15 38 .] 12.3 0.017 PF00400.22.fs 8/10 497 535 .. 1 38 [] 11.5 0.028 PF00400.22.ls 9/10 540 578 .. 1 38 [] 37.4 4.6e-08 PF00400.22.fs 9/10 540 578 .. 1 38 [] 35.4 5.2e-09 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 10, from 66 to 104: score 20.4, E = 8.8e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++++ H + V +++p+ g ++asg g+++iWd ek00180 66 PALAdIYtEHAHQVVVAKYAPS-GFYIASGDVSGKLRIWD 104 PF00400.22.ls: domain 1 of 10, from 66 to 104: score 22.4, E = 0.0015 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++++ H + V +++p+ g ++asg g+++iWd ek00180 66 PALAdIYtEHAHQVVVAKYAPS-GFYIASGDVSGKLRIWD 104 PF00400.22.fs: domain 2 of 10, from 154 to 193: score 21.9, E = 3.3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g +++++gH++ +++v++ ++ + +la+gS+D++ ++ ek00180 154 GSSVgEItGHNKVINSVDIKQSRPYRLATGSDDNCAAFFE 193 PF00400.22.ls: domain 2 of 10, from 154 to 193: score 23.9, E = 0.00052 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g +++++gH++ +++v++ ++ + +la+gS+D++ ++ ek00180 154 GSSVgEItGHNKVINSVDIKQSRPYRLATGSDDNCAAFFE 193 PF00400.22.fs: domain 3 of 10, from 197 to 235: score 46.0, E = 5.4e-12 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + k + ++H+ +V+cv+fspd g+++a++S+Dg i+i+d ek00180 197 FKFKfTVgDHSRFVNCVRFSPD-GNRFATASADGQIYIYD 235 PF00400.22.ls: domain 3 of 10, from 197 to 235: score 48.0, E = 3e-11 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + k + ++H+ +V+cv+fspd g+++a++S+Dg i+i+d ek00180 197 FKFKfTVgDHSRFVNCVRFSPD-GNRFATASADGQIYIYD 235 PF00400.22.ls: domain 4 of 10, from 242 to 280: score 38.6, E = 2.1e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ ++H ++++++++spd +++l+s+S D+t kiWd ek00180 242 VCALgGSkAHDGGIYAISWSPD-STHLLSASGDKTSKIWD 280 PF00400.22.fs: domain 4 of 10, from 242 to 280: score 36.6, E = 2.4e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ ++H ++++++++spd +++l+s+S D+t kiWd ek00180 242 VCALgGSkAHDGGIYAISWSPD-STHLLSASGDKTSKIWD 280 PF00400.22.fs: domain 5 of 10, from 328 to 368: score 33.7, E = 1.6e-08 *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-* ++++v++gH++++ c+ ++ +++ +++ sgS+Dg+i Wd ek00180 328 SKPLhVIkGHSKSIQCLTVHKNgGKSYIYSGSHDGHINYWD 368 PF00400.22.ls: domain 5 of 10, from 328 to 368: score 35.7, E = 1.5e-07 *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-* ++++v++gH++++ c+ ++ +++ +++ sgS+Dg+i Wd ek00180 328 SKPLhVIkGHSKSIQCLTVHKNgGKSYIYSGSHDGHINYWD 368 PF00400.22.fs: domain 7 of 10, from 469 to 491: score 12.3, E = 0.017 *->vafspdsgpllasgSrDgtikiWd<-* va++p g ++a g+ Dg++++++ ek00180 469 VAVHPG-GDTVAIGGVDGNVRLYS 491 PF00400.22.fs: domain 8 of 10, from 497 to 535: score 11.5, E = 0.028 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + l +++Vt+va+s+d g +la + + + + +++ ek00180 497 LKDEgKLlEAKGPVTDVAYSHD-GAFLAVCDASKVVTVFS 535 PF00400.22.ls: domain 9 of 10, from 540 to 578: score 37.4, E = 4.6e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +v++gH + + c+a+spd +++asg+ D +++W ek00180 540 YSENnVFyGHHAKIVCLAWSPD-NEHFASGGMDMMVYVWT 578 PF00400.22.fs: domain 9 of 10, from 540 to 578: score 35.4, E = 5.2e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +v++gH + + c+a+spd +++asg+ D +++W ek00180 540 YSENnVFyGHHAKIVCLAWSPD-NEHFASGGMDMMVYVWT 578 //