hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-00192477/chunk_1/iprscan-20080809-00192477.nocrc
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Query sequence: ek00180
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 308.8      4e-88  11

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/11     65   104 ..     1    46 []    25.0     0.01
SM00320    2/11    109   152 ..     1    46 []    10.8      9.5
SM00320    3/11    153   193 ..     1    46 []    25.3   0.0087
SM00320    4/11    196   235 ..     1    46 []    48.0  1.2e-09
SM00320    5/11    238   280 ..     1    46 []    43.5  2.7e-08
SM00320    6/11    327   368 ..     1    46 []    45.3  8.2e-09
SM00320    7/11    372   410 ..     1    46 []    14.3      2.7
SM00320    8/11    452   491 ..     1    46 []    17.2     0.92
SM00320    9/11    496   535 ..     1    46 []    21.3     0.13
SM00320   10/11    539   578 ..     1    46 []    40.0  3.3e-07
SM00320   11/11    582   621 ..     1    46 []    18.0     0.69

Alignments of top-scoring domains:
SM00320: domain 1 of 11, from 65 to 104: score 25.0, E = 0.01
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ l  +++ H +   V   ++ p+g       ++asg+  g++r+W
     ek00180    65    NpALADIYTEHAH--QVVVAKYAPSG------FYIASGDvSGKLRIW 103  

                   d<-*
                   d   
     ek00180   104 D    104  

SM00320: domain 2 of 11, from 109 to 152: score 10.8, E = 9.5
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt....
                      ++ l ++++   g   + ++a+  d+      +++a+ ++ + + + 
     ek00180   109    EhLLKYEYQPFAG--KIKDIAWTEDS------KRIAVVGeGREkfga 147  

                   irlWd<-*
                   + lWd   
     ek00180   148 VFLWD    152  

SM00320: domain 3 of 11, from 153 to 193: score 25.3, E = 0.0087
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ + +++gH++   ++sv++ ++      p +la+gs+D++  ++
     ek00180   153    SgSSVGEITGHNK--VINSVDIKQSR-----PYRLATGSdDNCAAFF 192  

                   d<-*
                   +   
     ek00180   193 E    193  

SM00320: domain 4 of 11, from 196 to 235: score 48.0, E = 1.2e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + k  +t   H+    V++v+fspdg      n++a++s Dg+i+++
     ek00180   196    PfKFKFTVGDHSR--FVNCVRFSPDG------NRFATASaDGQIYIY 234  

                   d<-*
                   d   
     ek00180   235 D    235  

SM00320: domain 5 of 11, from 238 to 280: score 43.5, E = 2.7e-08
                   *->t.kllrtlk...gHtgespVtsvafspdggssdspnllasgs.Dgti
                      t++ ++ l ++++H+g  +++++++spd+      ++l+s+s+D+t 
     ek00180   238    TgEKVCALGgskAHDG--GIYAISWSPDS------THLLSASgDKTS 276  

                   rlWd<-*
                   ++Wd   
     ek00180   277 KIWD    280  

SM00320: domain 6 of 11, from 327 to 368: score 45.3, E = 8.2e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+l+++kgH++  ++ +++++ +g    ++++++sgs+Dg+i  W
     ek00180   327    PsKPLHVIKGHSK--SIQCLTVHKNG----GKSYIYSGShDGHINYW 367  

                   d<-*
                   d   
     ek00180   368 D    368  

SM00320: domain 7 of 11, from 372 to 410: score 14.3, E = 2.7
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +  +  kgHt+   V+ ++++ +g       +l+s+s D t+r  
     ek00180   372    GeNDSFAGKGHTN--QVSRMTVDESG-------QLISCSmDDTVRYT 409  

                   d<-*
                   +   
     ek00180   410 S    410  

SM00320: domain 8 of 11, from 452 to 491: score 17.2, E = 0.92
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ +++++      +   va++p g      + +a g+ Dg++rl+
     ek00180   452    DqRKCFSIDNPGY--EPEVVAVHPGG------DTVAIGGvDGNVRLY 490  

                   d<-*
                   +   
     ek00180   491 S    491  

SM00320: domain 9 of 11, from 496 to 535: score 21.3, E = 0.13
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t k   +l   +g  pVt+va+s+dg       +la+++  + + ++
     ek00180   496    TlKDEGKLLEAKG--PVTDVAYSHDG------AFLAVCDaSKVVTVF 534  

                   d<-*
                   +   
     ek00180   535 S    535  

SM00320: domain 10 of 11, from 539 to 578: score 40.0, E = 3.3e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +   ++ gH +   + ++a+spd+      +++asg+ D  +++W
     ek00180   539    GySENNVFYGHHA--KIVCLAWSPDN------EHFASGGmDMMVYVW 577  

                   d<-*
                       
     ek00180   578 T    578  

SM00320: domain 11 of 11, from 582 to 621: score 18.0, E = 0.69
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + +++ ++H+  + V+s+a+ +        + l++ s+D +++ W
     ek00180   582    PeTRVKIQDAHRL-HHVSSLAWLDE-------HTLVTTShDASVKEW 620  

                   d<-*
                       
     ek00180   621 T    621  

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