hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-07162620/chunk_1/iprscan-20090618-07162620.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00224 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02181.13.ls Formin Homology 2 Domain 521.1 1.1e-153 1 PF02181.13.fs Formin Homology 2 Domain 519.2 4.4e-153 1 PF06371.4.fs Diaphanous GTPase-binding Domain 277.7 1.7e-90 1 PF06371.4.ls Diaphanous GTPase-binding Domain 279.3 7.1e-81 1 PF06367.7.fs Diaphanous FH3 Domain 238.8 8.2e-72 1 PF06367.7.ls Diaphanous FH3 Domain 240.7 2.9e-69 1 PF06345.2.fs DRF Autoregulatory Domain 29.9 4.6e-07 2 PF06345.2.ls DRF Autoregulatory Domain 33.2 8.3e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF06371.4.ls 1/1 103 297 .. 1 323 [] 279.3 7.1e-81 PF06371.4.fs 1/1 103 297 .. 1 323 [] 277.7 1.7e-90 PF06367.7.fs 1/1 301 494 .. 1 234 [] 238.8 8.2e-72 PF06367.7.ls 1/1 301 494 .. 1 234 [] 240.7 2.9e-69 PF02181.13.ls 1/1 641 1015 .. 1 413 [] 521.1 1.1e-153 PF02181.13.fs 1/1 641 1015 .. 1 413 [] 519.2 4.4e-153 PF06345.2.fs 2/2 1066 1080 .. 1 15 [] 29.8 5.1e-07 PF06345.2.ls 2/2 1066 1080 .. 1 15 [] 31.8 2.3e-06 Alignments of top-scoring domains: PF06371.4.ls: domain 1 of 1, from 103 to 297: score 279.3, E = 7.1e-81 *->lqmpsdeeLVdelFeelLkedrifmnlpedKrWeaLralsnekKWel +++s++e+ + lFe+++ ed mnl+e+K+ ++Lr++++ K+e+ ek00224 103 SLNLSEKEV-LDLFEKMM-ED---MNLNEEKK-APLRNKDFTTKREM 143 icqylsknkk.......gkkkksskselnekaiaSdileilteesspqeY ++qy+s +k+ +++ ++++k+sk+e++ s+qeY ek00224 144 VVQYISATAKsivgskvTGGLKNSKHECTL---------------SSQEY 178 iekLrsgassekllscekeeeehslknkslgslSpstkvvddgLkvaele +++Lrsg+s+ekll+c le ek00224 179 VHELRSGISDEKLLNC--------------------------------LE 196 sLrVsLrtnpvsWVkaFiklgNkGlirllkiLqtflkkkiyelestdsve sLrVsL++npvsWV++F+++ Gl++ll+ L+++l+kk++e ek00224 197 SLRVSLTSNPVSWVNNFGHE---GLGLLLDELEKLLDKKQQE-------- 235 sgvekskkdspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaq ek00224 - -------------------------------------------------- - qlqkqqlqqsttliektlpsidkkiqfecirClKalMNnklGlkrvLshe +idkk+q+++i+ClKa+MNnk+Gl+r+L++e ek00224 236 -------------------NIDKKNQYKLIQCLKAFMNNKFGLQRILGDE 266 esivikllvlsLdssklktrklvleLLaalCiv<-* +s ++ll++++d+++++++++ +++L+a+Civ ek00224 267 RS--LLLLARAIDPKQPNMMTEIVKILSAICIV 297 PF06371.4.fs: domain 1 of 1, from 103 to 297: score 277.7, E = 1.7e-90 *->lqmpsdeeLVdelFeelLkedrifmnlpedKrWeaLralsnekKWel +++s++e+ + lFe+++ ed mnl+e+K+ ++Lr++++ K+e+ ek00224 103 SLNLSEKEV-LDLFEKMM-ED---MNLNEEKK-APLRNKDFTTKREM 143 icqylsknkk.......gkkkksskselnekaiaSdileilteesspqeY ++qy+s +k+ +++ ++++k+sk+e++ s+qeY ek00224 144 VVQYISATAKsivgskvTGGLKNSKHECTL---------------SSQEY 178 iekLrsgassekllscekeeeehslknkslgslSpstkvvddgLkvaele +++Lrsg+s+ekll+c le ek00224 179 VHELRSGISDEKLLNC--------------------------------LE 196 sLrVsLrtnpvsWVkaFiklgNkGlirllkiLqtflkkkiyelestdsve sLrVsL++npvsWV++F+++ Gl++ll+ L+++l+kk++e ek00224 197 SLRVSLTSNPVSWVNNFGHE---GLGLLLDELEKLLDKKQQE-------- 235 sgvekskkdspssedlskasprpsPqqnssqesksqqtlkllsqlsaqaq ek00224 - -------------------------------------------------- - qlqkqqlqqsttliektlpsidkkiqfecirClKalMNnklGlkrvLshe +idkk+q+++i+ClKa+MNnk+Gl+r+L++e ek00224 236 -------------------NIDKKNQYKLIQCLKAFMNNKFGLQRILGDE 266 esivikllvlsLdssklktrklvleLLaalCiv<-* +s ++ll++++d+++++++++ +++L+a+Civ ek00224 267 RS--LLLLARAIDPKQPNMMTEIVKILSAICIV 297 PF06367.7.fs: domain 1 of 1, from 301 to 494: score 238.8, E = 8.2e-72 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva ++ +++l ai++ +e+ reRF ++v++l+ +++ l+++va ek00224 301 NILDKLLGAITTAAER-NNRERFSPIVEGLE------NQEALQLQVA 340 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +mqFINalv +sp +l+fR+hLR+Ef+++GL+ +l lk+ e+d+L ek00224 341 CMQFINALV---TSPYELDFRIHLRNEFLRSGLKTMLPDLKEK--ENDEL 385 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv d+q+k+F+en +e +dl el++rl +++ + ek00224 386 DIQLKVFDEN----KE------------DDLTELSHRLNDIR-------A 412 eldslssvaellsnllkltgaedlllSilQhllllredseeskLvsyikl e+d++ +v++ll n+lk+t ae ++lSilQh ll+r+d ++ + ++y+k+ ek00224 413 EMDDMNEVYHLLYNMLKDTAAENYFLSILQHFLLIRND-YYIR-PQYYKI 460 leeivqqIllhrtkppdpkfeqslqenldegterlld<-* +ee+v+qI+lh++ ++dp+f+++ + ++d ++l+d ek00224 461 IEECVSQIVLHCS-GMDPDFKYRQRLDID--LTHLID 494 PF06367.7.ls: domain 1 of 1, from 301 to 494: score 240.7, E = 2.9e-69 *->gGhelvleaiinfkevcdereRFrtlvsaldsfssgeedasleykva ++ +++l ai++ +e+ reRF ++v++l+ +++ l+++va ek00224 301 NILDKLLGAITTAAER-NNRERFSPIVEGLE------NQEALQLQVA 340 tmqFINalvvagnspedlqfRlhLRsEftelGLdeyleklkntssesdkL +mqFINalv +sp +l+fR+hLR+Ef+++GL+ +l lk+ e+d+L ek00224 341 CMQFINALV---TSPYELDFRIHLRNEFLRSGLKTMLPDLKEK--ENDEL 385 ddqIklFeenmidvrellddantktkvledleeleerleelkesfaetsv d+q+k+F+en +e +dl el++rl +++ + ek00224 386 DIQLKVFDEN----KE------------DDLTELSHRLNDIR-------A 412 eldslssvaellsnllkltgaedlllSilQhllllredseeskLvsyikl e+d++ +v++ll n+lk+t ae ++lSilQh ll+r+d ++ + ++y+k+ ek00224 413 EMDDMNEVYHLLYNMLKDTAAENYFLSILQHFLLIRND-YYIR-PQYYKI 460 leeivqqIllhrtkppdpkfeqslqenldegterlld<-* +ee+v+qI+lh++ ++dp+f+++ + ++d ++l+d ek00224 461 IEECVSQIVLHCS-GMDPDFKYRQRLDID--LTHLID 494 PF02181.13.ls: domain 1 of 1, from 641 to 1015: score 521.1, E = 1.1e-153 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse kk +kp++++K+++W+K++p++ +++++W ++e++fe+ ++ +++ ek00224 641 KKMYKPEVSMKRINWSKIEPTELSENCFWLRVKEDKFEN--PDLFAK 685 lEelFsakakkkkekks..seksskskkkkkeisvLDpkrsQNiaIlLrk l F+++ k +k++++ +++k++ kkk+ke+++LDpk++QN++I+L++ ek00224 686 LALNFATQIKVQKNAEAleEKKTGPTKKKVKELRILDPKTAQNLSIFLGS 735 lsklppeeivqailemDedvLgvvlflkemldllenLlkmaPtkeElkkl + ++p+e+i++ ile++ed L+ + l++nL k++P+++ l +l ek00224 736 Y-RMPYEDIRNVILEVNEDMLS--------EALIQNLVKHLPEQKILNEL 776 qekeykgdekspskLgraEqqFLlelskliprleeRlrallFkstFeeev +e+k++ +++L+++E qF +s+ +++l++Rl ++lFk+tFee++ ek00224 777 --AELKNE---YDDLCEPE-QFGVVMSS-VKMLQPRLSSILFKLTFEEHI 819 eelkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAkGF +++kps+ +++ A+eeL++S++f +lLel+L +GNyMNsG+r+ ++ GF ek00224 820 NNIKPSIIAVTLACEELKKSESFNRLLELVLLVGNYMNSGSRN-AQSLGF 868 kLssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpelld k+++L+K+ d+Ks+ d+ktTLLHf+++++ee k+ ++l+ ek00224 869 KINFLCKIRDTKSA-DQKTTLLHFIADICEE------------KYRDILK 905 fsseLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsdeep f++eL+hVe+A+kv+ L++++ ++e+++ le++++++++ +e + ek00224 906 FPEELEHVESASKVSAQILKSNLASMEQQIVHLERDIKKFPQ----AENQ 951 sdkFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedpkde +dkFve+m++F ++A+e+++kL +++++++l+++l eYF +d+k + ek00224 952 HDKFVEKMTSFTKTAREQYEKLSTMHNNMMKLYENLGEYF---IFDSK-T 997 tspeeFFkilrdFlnefk<-* +s+eeFF++l++F++ f ek00224 998 VSIEEFFGDLNNFRTLFL 1015 PF02181.13.fs: domain 1 of 1, from 641 to 1015: score 519.2, E = 4.4e-153 *->kkepkpkkkLKpLhWdKlnpsqdrgtsvWdkldeesfekkldldlse kk +kp++++K+++W+K++p++ +++++W ++e++fe+ ++ +++ ek00224 641 KKMYKPEVSMKRINWSKIEPTELSENCFWLRVKEDKFEN--PDLFAK 685 lEelFsakakkkkekks..seksskskkkkkeisvLDpkrsQNiaIlLrk l F+++ k +k++++ +++k++ kkk+ke+++LDpk++QN++I+L++ ek00224 686 LALNFATQIKVQKNAEAleEKKTGPTKKKVKELRILDPKTAQNLSIFLGS 735 lsklppeeivqailemDedvLgvvlflkemldllenLlkmaPtkeElkkl + ++p+e+i++ ile++ed L+ + l++nL k++P+++ l +l ek00224 736 Y-RMPYEDIRNVILEVNEDMLS--------EALIQNLVKHLPEQKILNEL 776 qekeykgdekspskLgraEqqFLlelskliprleeRlrallFkstFeeev +e+k++ +++L+++E qF +s+ +++l++Rl ++lFk+tFee++ ek00224 777 --AELKNE---YDDLCEPE-QFGVVMSS-VKMLQPRLSSILFKLTFEEHI 819 eelkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrrrGnAkGF +++kps+ +++ A+eeL++S++f +lLel+L +GNyMNsG+r+ ++ GF ek00224 820 NNIKPSIIAVTLACEELKKSESFNRLLELVLLVGNYMNSGSRN-AQSLGF 868 kLssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKLklpelld k+++L+K+ d+Ks+ d+ktTLLHf+++++ee k+ ++l+ ek00224 869 KINFLCKIRDTKSA-DQKTTLLHFIADICEE------------KYRDILK 905 fsseLshVekAakvdleeLeadvkeLekglkklekelelseeSkvsdeep f++eL+hVe+A+kv+ L++++ ++e+++ le++++++++ +e + ek00224 906 FPEELEHVESASKVSAQILKSNLASMEQQIVHLERDIKKFPQ----AENQ 951 sdkFvevmkeFleeAeekldkLesllkeakelfkelteYFghggedpkde +dkFve+m++F ++A+e+++kL +++++++l+++l eYF +d+k + ek00224 952 HDKFVEKMTSFTKTAREQYEKLSTMHNNMMKLYENLGEYF---IFDSK-T 997 tspeeFFkilrdFlnefk<-* +s+eeFF++l++F++ f ek00224 998 VSIEEFFGDLNNFRTLFL 1015 PF06345.2.fs: domain 2 of 2, from 1066 to 1080: score 29.8, E = 5.1e-07 *->GvmDsLLEALqsGaA<-* GvmD+LLEALqsGaA ek00224 1066 GVMDNLLEALQSGAA 1080 PF06345.2.ls: domain 2 of 2, from 1066 to 1080: score 31.8, E = 2.3e-06 *->GvmDsLLEALqsGaA<-* GvmD+LLEALqsGaA ek00224 1066 GVMDNLLEALQSGAA 1080 //