hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-00253484/chunk_1/iprscan-20080809-00253484.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ek00226
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       121.5    2.2e-33   7
PF00400.22.fs WD domain, G-beta repeat                       107.7    2.2e-29   7
PF00612.17.ls IQ calmodulin-binding motif                     12.4        1.5   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/7      65   103 ..     1    38 []    24.3  0.00039
PF00400.22.fs   1/7      65   103 ..     1    38 []    22.4  2.5e-05
PF00400.22.fs   2/7     108   144 ..     1    34 [.    14.1   0.0052
PF00400.22.fs   3/7     155   194 ..     1    38 []    14.1   0.0054
PF00400.22.fs   4/7     205   244 ..     1    38 []    18.0  0.00042
PF00612.17.ls   1/1     701   721 ..     1    21 []    12.4      1.5
PF00400.22.ls   7/7     775   813 ..     1    38 []    28.4  2.3e-05
PF00400.22.fs   7/7     775   813 ..     1    38 []    26.5  1.7e-06

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 7, from 65 to 103: score 24.3, E = 0.00039
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++  +l+ H + V+ ++++   g++++sgS+D ++ i +   
     ek00226    65    LKLEaTLnVHDGCVNTICWNDT-GEYILSGSDDTKLVISN    103  

PF00400.22.fs: domain 1 of 7, from 65 to 103: score 22.4, E = 2.5e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++  +l+ H + V+ ++++   g++++sgS+D ++ i +   
     ek00226    65    LKLEaTLnVHDGCVNTICWNDT-GEYILSGSDDTKLVISN    103  

PF00400.22.fs: domain 2 of 7, from 108 to 144: score 14.1, E = 0.0052
                   *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgti<-*
                      + ++++ +gH + + + +f p ++ ++++s+S Dg i   
     ek00226   108    KVLTtIRsGHRANIFSAKFLPCtNDKQIVSCSGDGVI    144  

PF00400.22.fs: domain 3 of 7, from 155 to 194: score 14.1, E = 0.0054
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +  ++ H +t + +  +p+++ +++s+++Dgt++ +d   
     ek00226   155    TNRQcQFtCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFD    194  

PF00400.22.fs: domain 4 of 7, from 205 to 244: score 18.0, E = 0.00042
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +  ++l     + t+va++p+ + +la g++D +++i+d   
     ek00226   205    DCKDdILiNCRRAATSVAICPPIPYYLAVGCSDSSVRIYD    244  

PF00612.17.ls: domain 1 of 1, from 701 to 721: score 12.4, E = 1.5
                   *->rraaikIQaawRGylaRkryk<-*
                      r a+ +IQ ++R+ + Rk+++   
     ek00226   701    RSAVARIQEFFRRRKERKEME    721  

PF00400.22.ls: domain 7 of 7, from 775 to 813: score 28.4, E = 2.3e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e +  l++ ++ V+c+  +p   p+las++ D  ikiW+   
     ek00226   775    AEHLmLLeADNHVVNCLQPHPF-DPILASSGIDYDIKIWS    813  

PF00400.22.fs: domain 7 of 7, from 775 to 813: score 26.5, E = 1.7e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e +  l++ ++ V+c+  +p   p+las++ D  ikiW+   
     ek00226   775    AEHLmLLeADNHVVNCLQPHPF-DPILASSGIDYDIKIWS    813  

//