# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oek00291.fasta.nr -Q ek00291.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ek00291, 708 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6822659 sequences Expectation_n fit: rho(ln(x))= 5.3046+/-0.000187; mu= 12.8625+/- 0.010 mean_var=79.0185+/-15.342, 0's: 41 Z-trim: 55 B-trim: 32 in 2/65 Lambda= 0.144281 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|116856|sp|P08253|MMP2_HUMAN 72 kDa type IV coll ( 660) 4703 988.8 0 gi|61368087|gb|AAX43100.1| matrix metalloproteinas ( 661) 4703 988.8 0 gi|109128539|ref|XP_001087939.1| PREDICTED: simila ( 660) 4692 986.5 0 gi|189053422|dbj|BAG35588.1| unnamed protein produ ( 660) 4689 985.9 0 gi|114662548|ref|XP_001167520.1| PREDICTED: matrix ( 660) 4611 969.6 0 gi|180671|gb|AAA35701.1| collagenase type IV precu ( 644) 4603 967.9 0 gi|48479264|gb|AAT44903.1| matrix metalloproteinas ( 660) 4595 966.3 0 gi|854415|emb|CAA50583.1| type IV collagenase [Rat ( 662) 4532 953.2 0 gi|461766|sp|P33434|MMP2_MOUSE 72 kDa type IV coll ( 662) 4530 952.8 0 gi|146345459|sp|P33436|MMP2_RAT 72 kDa type IV col ( 662) 4522 951.1 0 gi|15419710|gb|AAK97133.1|AF295805_1 gelatinase A ( 661) 4516 949.8 0 gi|151556868|gb|AAI49405.1| Matrix metallopeptidas ( 661) 4514 949.4 0 gi|1705979|sp|P50757|MMP2_RABIT 72 kDa type IV col ( 662) 4514 949.4 0 gi|5822007|pdb|1CK7|A Chain A, Gelatinase A (Full- ( 631) 4507 948.0 0 gi|75049982|sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV co ( 661) 4488 944.0 0 gi|7688731|gb|AAF67517.1|AF177217_1 matrix metallo ( 632) 4419 929.6 0 gi|189217853|ref|NP_001121363.1| matrix metallopro ( 610) 4369 919.2 0 gi|114662550|ref|XP_001167493.1| PREDICTED: matrix ( 610) 4361 917.6 0 gi|114662546|ref|XP_001167467.1| PREDICTED: matrix ( 634) 4360 917.4 0 gi|109128541|ref|XP_001087814.1| PREDICTED: simila ( 610) 4358 916.9 0 gi|109128537|ref|XP_001087696.1| PREDICTED: simila ( 689) 4357 916.8 0 gi|73950378|ref|XP_535300.2| PREDICTED: similar to ( 612) 4268 898.2 0 gi|149699545|ref|XP_001493331.1| PREDICTED: matrix ( 609) 4245 893.4 0 gi|126296342|ref|XP_001373030.1| PREDICTED: simila ( 661) 4201 884.3 0 gi|114662552|ref|XP_510971.2| PREDICTED: matrix me ( 584) 4185 880.9 0 gi|109128543|ref|XP_001087335.1| PREDICTED: simila ( 584) 4182 880.3 0 gi|149636997|ref|XP_001508394.1| PREDICTED: simila ( 704) 4136 870.8 0 gi|90076374|dbj|BAE87867.1| unnamed protein produc ( 581) 4133 870.1 0 gi|2499908|sp|Q90611|MMP2_CHICK 72 kDa type IV col ( 663) 4014 845.4 0 gi|37694086|gb|AAQ98971.1| gelatinase A [Meleagris ( 654) 3914 824.5 0 gi|18031736|gb|AAL01591.1| matrix metalloproteinas ( 656) 3903 822.2 0 gi|58476704|gb|AAH89734.1| Matrix metallopeptidase ( 655) 3889 819.3 0 gi|49117849|gb|AAH72762.1| Mmp2-prov protein [Xeno ( 595) 3595 758.1 1.8e-216 gi|6539524|dbj|BAA85769.2| gelatinase A [Oryzias l ( 657) 3542 747.1 4e-213 gi|32251074|gb|AAP74482.1| matrix metalloproteinas ( 657) 3524 743.4 5.4e-212 gi|4996455|dbj|BAA78479.1| matrix metalloproteinas ( 655) 3523 743.1 6.2e-212 gi|49900524|gb|AAH76545.1| Matrix metalloproteinas ( 657) 3522 742.9 7.2e-212 gi|15718387|dbj|BAB68365.1| gelatinase [Paralichth ( 658) 3518 742.1 1.3e-211 gi|47211622|emb|CAF95801.1| unnamed protein produc ( 629) 3497 737.7 2.6e-210 gi|70568308|dbj|BAE06265.1| matrix metalloproteina ( 658) 3476 733.4 5.5e-209 gi|32766503|gb|AAH54947.1| Mmp2 protein [Xenopus l ( 559) 3318 700.4 3.8e-199 gi|148727872|gb|ABR08571.1| matrix metalloproteina ( 489) 3203 676.4 5.6e-192 gi|23200042|pdb|1EAK|A Chain A, Catalytic Domain O ( 421) 3040 642.5 8.1e-182 gi|119603232|gb|EAW82826.1| matrix metallopeptidas ( 430) 3020 638.3 1.5e-180 gi|5420369|emb|CAB46656.1| matrix metalloproteinas ( 385) 2682 567.9 2.1e-159 gi|6116886|dbj|BAA85770.1| gelatinase B [Oryzias l ( 690) 1976 421.1 5.6e-115 gi|49899913|gb|AAH76927.1| Matrix metallopeptidase ( 670) 1971 420.1 1.1e-114 gi|60207620|gb|AAX14805.1| matrix metalloproteinas ( 679) 1957 417.2 8.5e-114 gi|119709546|dbj|BAF42673.1| matrix metalloprotein ( 683) 1957 417.2 8.6e-114 gi|124504280|gb|AAI28677.1| Mmp-9th protein [Xenop ( 674) 1956 417.0 9.8e-114 >>gi|116856|sp|P08253|MMP2_HUMAN 72 kDa type IV collagen (660 aa) initn: 4703 init1: 4703 opt: 4703 Z-score: 5287.5 bits: 988.8 E(): 0 Smith-Waterman score: 4703; 100.000% identity (100.000% similar) in 660 aa overlap (49-708:1-660) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA :::::::::::::::::::::::::::::: gi|116 MEALMARGALTGPLRALCLLGCLLSHAAAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY 580 590 600 610 620 630 680 690 700 ek0029 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::: gi|116 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 >>gi|61368087|gb|AAX43100.1| matrix metalloproteinase 2 (661 aa) initn: 4703 init1: 4703 opt: 4703 Z-score: 5287.4 bits: 988.8 E(): 0 Smith-Waterman score: 4703; 100.000% identity (100.000% similar) in 660 aa overlap (49-708:1-660) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA :::::::::::::::::::::::::::::: gi|613 MEALMARGALTGPLRALCLLGCLLSHAAAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY 580 590 600 610 620 630 680 690 700 ek0029 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::: gi|613 FFKGAYYLKLENQSLKSVKFGSIKSDWLGCL 640 650 660 >>gi|109128539|ref|XP_001087939.1| PREDICTED: similar to (660 aa) initn: 4692 init1: 4692 opt: 4692 Z-score: 5275.1 bits: 986.5 E(): 0 Smith-Waterman score: 4692; 99.697% identity (100.000% similar) in 660 aa overlap (49-708:1-660) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA :::::::::::::::::::::::::::::: gi|109 MEALMARGALTGPLRALCLLGCLLSHAAAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|109 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYSKNFRLSQDDIKGIQELYGASPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|109 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGSGHSY 580 590 600 610 620 630 680 690 700 ek0029 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::: gi|109 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 >>gi|189053422|dbj|BAG35588.1| unnamed protein product [ (660 aa) initn: 4689 init1: 4689 opt: 4689 Z-score: 5271.7 bits: 985.9 E(): 0 Smith-Waterman score: 4689; 99.697% identity (99.848% similar) in 660 aa overlap (49-708:1-660) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA :::::::::::::::::::::::::::::: gi|189 MEALMARGALTGPLRALCLLGCLLSHAAAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|189 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSAGTLERGYPKPLTSLGLPPDVQRVDA 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|189 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLGAVVDLQGGGHSY 580 590 600 610 620 630 680 690 700 ek0029 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::: gi|189 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 >>gi|114662548|ref|XP_001167520.1| PREDICTED: matrix met (660 aa) initn: 4611 init1: 4611 opt: 4611 Z-score: 5184.0 bits: 969.6 E(): 0 Smith-Waterman score: 4611; 98.182% identity (98.333% similar) in 660 aa overlap (49-708:1-660) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA ::::::::::::::::::: gi|114 MEALMARGALTGPLRALCLXXXXXXXXXXX 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|114 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGSGHSY 580 590 600 610 620 630 680 690 700 ek0029 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::: gi|114 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 >>gi|180671|gb|AAA35701.1| collagenase type IV precursor (644 aa) initn: 4603 init1: 4603 opt: 4603 Z-score: 5175.1 bits: 967.9 E(): 0 Smith-Waterman score: 4603; 100.000% identity (100.000% similar) in 644 aa overlap (65-708:1-644) 40 50 60 70 80 90 ek0029 PATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAAPSPIIKFPGDVAPKTD :::::::::::::::::::::::::::::: gi|180 LCLLGCLLSHAAAAPSPIIKFPGDVAPKTD 10 20 30 100 110 120 130 140 150 ek0029 KELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 KELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPD 40 50 60 70 80 90 160 170 180 190 200 210 ek0029 VANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 VANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGE 100 110 120 130 140 150 220 230 240 250 260 270 ek0029 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYG 160 170 180 190 200 210 280 290 300 310 320 330 ek0029 NADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 NADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNA 220 230 240 250 260 270 340 350 360 370 380 390 ek0029 EGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 EGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPETAMSTVGGNSEG 280 290 300 310 320 330 400 410 420 430 440 450 ek0029 APCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 APCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCPDQGYSLFLVAAHEFG 340 350 360 370 380 390 460 470 480 490 500 510 ek0029 HAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPDIDLGTGPTPTLGPVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 HAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPDIDLGTGPTPTLGPVTP 400 410 420 430 440 450 520 530 540 550 560 570 ek0029 EICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 EICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEA 460 470 480 490 500 510 580 590 600 610 620 630 ek0029 PQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 PQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD 520 530 540 550 560 570 640 650 660 670 680 690 ek0029 KFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|180 KFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLK 580 590 600 610 620 630 700 ek0029 SVKFGSIKSDWLGC :::::::::::::: gi|180 SVKFGSIKSDWLGC 640 >>gi|48479264|gb|AAT44903.1| matrix metalloproteinase 2 (660 aa) initn: 4595 init1: 4595 opt: 4595 Z-score: 5166.0 bits: 966.3 E(): 0 Smith-Waterman score: 4595; 97.273% identity (99.394% similar) in 660 aa overlap (49-708:1-660) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA ::: .:::::.. :::::.:::::..:::: gi|484 MEARVARGALASLLRALCVLGCLLGRAAAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|484 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCTTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG ::::::::::::::::.:::::::.::::::::::::::::::::::::::::::::::: gi|484 YGFCPHEALFTMGGNADGQPCKFPYRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|484 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTSNYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|484 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSHDDIKGIQELYGASPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVA :: :::::::::::::::::::::::::::::::::::::::::::::::::: :::::: gi|484 IDTGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPTGPLLVA 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDA :::::::::::::::::::::::::::::::.::::::::::::::::::::::::.::: gi|484 TFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQKVDA 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|484 AFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGSGHSY 580 590 600 610 620 630 680 690 700 ek0029 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::: gi|484 FFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 >>gi|854415|emb|CAA50583.1| type IV collagenase [Rattus (662 aa) initn: 3139 init1: 3139 opt: 4532 Z-score: 5095.1 bits: 953.2 E(): 0 Smith-Waterman score: 4532; 95.468% identity (98.489% similar) in 662 aa overlap (49-708:1-662) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA ::: .. :.:.::::.::.: :::.:: :: gi|854 MEARLVWGVLVGPLRVLCVLCCLLGHAIAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::..: gi|854 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARALKV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|854 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::.::.::::::::::::::::::::::::: gi|854 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGREYSSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG ::::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::: gi|854 YGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC ::::::::::::::::::::::::::::::::::::::.:::.:::::.::::::::::: gi|854 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRNDGKVWCATTTNYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD ::::::::::::::::::::::::::::::::::::::::::::.::::::::::: ::: gi|854 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSHDDIKGIQELYGPSPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDL--GTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLL : :::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|854 ADTDTGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPTGPLL 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 VATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRV :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::.: gi|854 VATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQQV 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 DAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGH ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|854 DAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDNLDAVVDLQGGGH 580 590 600 610 620 630 680 690 700 ek0029 SYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::::: gi|854 SYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 >>gi|461766|sp|P33434|MMP2_MOUSE 72 kDa type IV collagen (662 aa) initn: 3137 init1: 3137 opt: 4530 Z-score: 5092.8 bits: 952.8 E(): 0 Smith-Waterman score: 4530; 95.619% identity (98.489% similar) in 662 aa overlap (49-708:1-662) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA ::: .: :::.::::.::.: :::..: :: gi|461 MEARVAWGALAGPLRVLCVLCCLLGRAIAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|461 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::..: gi|461 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARALKV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|461 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::.::.::::::::::::::::::::::::: gi|461 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGREYSSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG ::::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::: gi|461 YGFCPHEALFTMGGNADGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC ::::::::::::::::::::::::::::::::::::::.:::.:::::.::::::::::: gi|461 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRNDGKVWCATTTNYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD ::::::::::::::::::::::::::::::::::::::::::::.::::::::::: ::: gi|461 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSHDDIKGIQELYGPSPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDL--GTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLL : :::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|461 ADTDTGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPTGPLL 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 VATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRV :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::.: gi|461 VATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQQV 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 DAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGH ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|461 DAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDNLDAVVDLQGGGH 580 590 600 610 620 630 680 690 700 ek0029 SYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::::: gi|461 SYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 >>gi|146345459|sp|P33436|MMP2_RAT 72 kDa type IV collage (662 aa) initn: 3133 init1: 3133 opt: 4522 Z-score: 5083.8 bits: 951.1 E(): 0 Smith-Waterman score: 4522; 95.166% identity (98.489% similar) in 662 aa overlap (49-708:1-662) 20 30 40 50 60 70 ek0029 PRSRLQPGGEAATRTEPATPGRRAGPGSATMEALMARGALTGPLRALCLLGCLLSHAAAA ::: .. :.:.::::.::.: :::.:: :: gi|146 MEARLVWGVLVGPLRVLCVLCCLLGHAIAA 10 20 30 80 90 100 110 120 130 ek0029 PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|146 PSPIIKFPGDVSPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLD 40 50 60 70 80 90 140 150 160 170 180 190 ek0029 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::..: gi|146 QNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARALKV 100 110 120 130 140 150 200 210 220 230 240 250 ek0029 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 WSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDD 160 170 180 190 200 210 260 270 280 290 300 310 ek0029 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGK :::::::::::::::::::::::::::::::.::.::::::::::::::::::::::::: gi|146 ELWTLGEGQVVRVKYGNADGEYCKFPFLFNGREYSSCTDTGRSDGFLWCSTTYNFEKDGK 220 230 240 250 260 270 320 330 340 350 360 370 ek0029 YGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG :::::::::::::::..:::::::::::::::.::::::::::::::::::::::::::: gi|146 YGFCPHEALFTMGGNGDGQPCKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDYDRDKKYG 280 290 300 310 320 330 380 390 400 410 420 430 ek0029 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC ::::::::::::::::::::::::::::::::::::::::::.:::::.::::::::::: gi|146 FCPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKVWCATTTNYDDDRKWGFC 340 350 360 370 380 390 440 450 460 470 480 490 ek0029 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPD ::::::::::::::::::::::::::::::::::::::::::::.::::::::::: ::: gi|146 PDQGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSNDDIKGIQELYGPSPD 400 410 420 430 440 450 500 510 520 530 540 550 ek0029 IDL--GTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLL : :::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|146 ADTDTGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPTGPLL 460 470 480 490 500 510 560 570 580 590 600 610 ek0029 VATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRV :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::.: gi|146 VATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWVYSASTLERGYPKPLTSLGLPPDVQQV 520 530 540 550 560 570 620 630 640 650 660 670 ek0029 DAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGH :::::::::::::::.::::::::::::::::::::::::.::::::::::::::::::: gi|146 DAAFNWSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDNLDAVVDLQGGGH 580 590 600 610 620 630 680 690 700 ek0029 SYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC :::::::::::::::::::::::::::::::: gi|146 SYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC 640 650 660 708 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 00:44:55 2008 done: Sat Aug 9 00:46:59 2008 Total Scan time: 952.420 Total Display time: 0.290 Function used was FASTA [version 34.26.5 April 26, 2007]