hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-00470022/chunk_1/iprscan-20080809-00470022.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00291 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00413.14.fs Matrixin 330.6 4.9e-114 1 PF00040.10.fs Fibronectin type II domain 288.3 3e-111 3 PF00413.14.ls Matrixin 332.5 6.9e-97 1 PF00040.10.ls Fibronectin type II domain 294.2 2.2e-85 3 PF00045.10.ls Hemopexin 209.2 8.5e-60 4 PF00045.10.fs Hemopexin 201.7 1.6e-59 4 PF01471.9.fs Putative peptidoglycan binding domain 31.8 2.8e-08 1 PF01471.9.ls Putative peptidoglycan binding domain 28.9 1.6e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01471.9.ls 1/1 91 149 .. 1 70 [] 28.9 1.6e-05 PF01471.9.fs 1/1 118 149 .. 39 70 .] 31.8 2.8e-08 PF00413.14.fs 1/1 166 494 .. 1 175 [] 330.6 4.9e-114 PF00413.14.ls 1/1 166 494 .. 1 175 [] 332.5 6.9e-97 PF00040.10.fs 1/3 281 322 .. 1 42 [] 92.4 2.5e-35 PF00040.10.ls 1/3 281 322 .. 1 42 [] 94.3 3.3e-25 PF00040.10.ls 2/3 339 380 .. 1 42 [] 93.9 4.5e-25 PF00040.10.fs 2/3 339 380 .. 1 42 [] 91.9 3.7e-35 PF00040.10.fs 3/3 397 438 .. 1 42 [] 104.0 7.8e-40 PF00040.10.ls 3/3 397 438 .. 1 42 [] 106.0 1e-28 PF00045.10.fs 1/4 523 566 .. 1 50 [] 42.5 6.6e-12 PF00045.10.ls 1/4 523 566 .. 1 50 [] 44.4 3.7e-10 PF00045.10.fs 2/4 568 611 .. 1 50 [] 54.3 2e-15 PF00045.10.ls 2/4 568 611 .. 1 50 [] 56.1 1.1e-13 PF00045.10.ls 3/4 616 663 .. 1 50 [] 75.0 2.2e-19 PF00045.10.fs 3/4 616 663 .. 1 50 [] 73.1 4.7e-21 PF00045.10.fs 4/4 665 708 .] 1 50 [] 31.9 9.9e-09 PF00045.10.ls 4/4 665 708 .] 1 50 [] 33.7 5.8e-07 Alignments of top-scoring domains: PF01471.9.ls: domain 1 of 1, from 91 to 149: score 28.9, E = 1.6e-05 *->sgedVkelQqyLkrlGyltpglgalssrippvDGyfGp.TeeAVkaF + +d +++ qyL+ ++ p ++ +++ +k++ ek00291 91 PKTDKELAVQYLNTFYGC-P----------KE-SCNLFvLKDTLKKM 125 QranGLpvdGivdpaTlaaLkqpr<-* Q+++GLp++G +d++T++ +++pr ek00291 126 QKFFGLPQTGDLDQNTIETMRKPR 149 PF01471.9.fs: domain 1 of 1, from 118 to 149: score 31.8, E = 2.8e-08 *->TeeAVkaFQranGLpvdGivdpaTlaaLkqpr<-* +++ +k++Q+++GLp++G +d++T++ +++pr ek00291 118 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPR 149 PF00413.14.fs: domain 1 of 1, from 166 to 494: score 330.6, E = 4.9e-114 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->kWkkkngtLTYrivnytlppdLprdeVrrairrAFkvWseVtpLtFt kW+k+ +TYri +yt pdL++++V++a++rAF+vWs+VtpL+F+ ek00291 166 KWDKNQ--ITYRIIGYT--PDLDPETVDDAFARAFQVWSDVTPLRFS 208 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx evpdydergtgeADIkIsFargdHGDgyPaFDGpgGvLAHAFfPpymrke ++ + g+ ADI+I F+r +HGDgyP FDG++G+LAHAF+P ek00291 209 RIH---D-GE--ADIMINFGRWEHGDGYP-FDGKDGLLAHAFAP------ 245 RF xxxxxxxxxxxxxxxxxxx GpgigGdiHFDdDEtWtvg............................... G+g gGd HFDdDE Wt+g+++ + + ++ +++ + + ++++ ++ ek00291 246 GTGVGGDSHFDDDELWTLGegqvvrvkygnadgeyckfpflfngkeynsc 295 RF .................................................. ++++++++ +++ + +++++ + +++ + +++ ++++ + + + ek00291 296 tdtgrsdgflwcsttynfekdgkygfcphealftmggnaegqpckfpfrf 345 RF .................................................. ++++ ++ ++++++++ + +++++ +++++ + +++ ++ ++++++ ek00291 346 qgtsydscttegrtdgyrwcgttedydrdkkygfcpetamstvggnsega 395 RF xxxxxx ............................................pegvnL + + + +++ ++ ++ ++++++ ++ + +++++ + +++g++L ek00291 396 pcvfpftflgnkyesctsagrsdgkmwcattanydddrkwgfcpDQGYSL 445 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx flVAaHEiGHaLGLgHSsdpsAlMyPyYrpyvrdvenFrLsqDDikGIQs flVAaHE+GHa GL+HS+dp+AlM+P Y+ y+ +nFrLsqDDikGIQ+ ek00291 446 FLVAAHEFGHAMGLEHSQDPGALMAPIYT-YT---KNFRLSQDDIKGIQE 491 RF xxx LYG<-* LYG ek00291 492 LYG 494 PF00413.14.ls: domain 1 of 1, from 166 to 494: score 332.5, E = 6.9e-97 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->kWkkkngtLTYrivnytlppdLprdeVrrairrAFkvWseVtpLtFt kW+k+ +TYri +yt pdL++++V++a++rAF+vWs+VtpL+F+ ek00291 166 KWDKNQ--ITYRIIGYT--PDLDPETVDDAFARAFQVWSDVTPLRFS 208 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx evpdydergtgeADIkIsFargdHGDgyPaFDGpgGvLAHAFfPpymrke ++ + g+ ADI+I F+r +HGDgyP FDG++G+LAHAF+P ek00291 209 RIH---D-GE--ADIMINFGRWEHGDGYP-FDGKDGLLAHAFAP------ 245 RF xxxxxxxxxxxxxxxxxxx GpgigGdiHFDdDEtWtvg............................... G+g gGd HFDdDE Wt+g+++ + + ++ +++ + + ++++ ++ ek00291 246 GTGVGGDSHFDDDELWTLGegqvvrvkygnadgeyckfpflfngkeynsc 295 RF .................................................. ++++++++ +++ + +++++ + +++ + +++ ++++ + + + ek00291 296 tdtgrsdgflwcsttynfekdgkygfcphealftmggnaegqpckfpfrf 345 RF .................................................. ++++ ++ ++++++++ + +++++ +++++ + +++ ++ ++++++ ek00291 346 qgtsydscttegrtdgyrwcgttedydrdkkygfcpetamstvggnsega 395 RF xxxxxx ............................................pegvnL + + + +++ ++ ++ ++++++ ++ + +++++ + +++g++L ek00291 396 pcvfpftflgnkyesctsagrsdgkmwcattanydddrkwgfcpDQGYSL 445 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx flVAaHEiGHaLGLgHSsdpsAlMyPyYrpyvrdvenFrLsqDDikGIQs flVAaHE+GHa GL+HS+dp+AlM+P Y+ y+ +nFrLsqDDikGIQ+ ek00291 446 FLVAAHEFGHAMGLEHSQDPGALMAPIYT-YT---KNFRLSQDDIKGIQE 491 RF xxx LYG<-* LYG ek00291 492 LYG 494 PF00040.10.fs: domain 1 of 3, from 281 to 322: score 92.4, E = 2.5e-35 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* C+FPF++nGk+Y+sCT++GRsdg+lWCsTT+N+++D+k+GFC ek00291 281 CKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFC 322 PF00040.10.ls: domain 1 of 3, from 281 to 322: score 94.3, E = 3.3e-25 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* C+FPF++nGk+Y+sCT++GRsdg+lWCsTT+N+++D+k+GFC ek00291 281 CKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFC 322 PF00040.10.ls: domain 2 of 3, from 339 to 380: score 93.9, E = 4.5e-25 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* C+FPF+++G sY+sCT+eGR+dg++WC+TT++YDrDkk+GFC ek00291 339 CKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFC 380 PF00040.10.fs: domain 2 of 3, from 339 to 380: score 91.9, E = 3.7e-35 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* C+FPF+++G sY+sCT+eGR+dg++WC+TT++YDrDkk+GFC ek00291 339 CKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFC 380 PF00040.10.fs: domain 3 of 3, from 397 to 438: score 104.0, E = 7.8e-40 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* CvFPF++ G++YesCTs+GRsdg++WC+TTaNYD+D+kwGFC ek00291 397 CVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 438 PF00040.10.ls: domain 3 of 3, from 397 to 438: score 106.0, E = 1e-28 *->CvFPFiynGksYesCTseGRsdgrlWCsTTaNYDrDkkwGFC<-* CvFPF++ G++YesCTs+GRsdg++WC+TTaNYD+D+kwGFC ek00291 397 CVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFC 438 PF00045.10.fs: domain 1 of 4, from 523 to 566: score 42.5, E = 6.6e-12 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg +D + ++r g+++FFk+++ Wr + p+ P l++++wp ek00291 523 FDGIAQIR--GEIFFFKDRFIWRTVTPR---DKPMGPLLVATFWP-E 563 lpc<-* lp ek00291 564 LPE 566 PF00045.10.ls: domain 1 of 4, from 523 to 566: score 44.4, E = 3.7e-10 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg +D + ++r g+++FFk+++ Wr + p+ P l++++wp ek00291 523 FDGIAQIR--GEIFFFKDRFIWRTVTPR---DKPMGPLLVATFWP-E 563 lpc<-* lp ek00291 564 LPE 566 PF00045.10.fs: domain 2 of 4, from 568 to 611: score 54.3, E = 2e-15 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg iDA++e ++++k+ FF G+ YW ++ t +++gyPk++++l g ek00291 568 IDAVYEAPQEEKAVFFAGNEYWIYSAST---LERGYPKPLTSL---G 608 lpc<-* lp+ ek00291 609 LPP 611 PF00045.10.ls: domain 2 of 4, from 568 to 611: score 56.1, E = 1.1e-13 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg iDA++e ++++k+ FF G+ YW ++ t +++gyPk++++l g ek00291 568 IDAVYEAPQEEKAVFFAGNEYWIYSAST---LERGYPKPLTSL---G 608 lpc<-* lp+ ek00291 609 LPP 611 PF00045.10.ls: domain 3 of 4, from 616 to 663: score 75.0, E = 2.2e-19 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg +DAAf ++ ++ktY+F Gdk+Wr+++ ++++dpg+Pkli+d w+ ek00291 616 VDAAFNWSKNKKTYIFAGDKFWRYNEV-KKKMDPGFPKLIADAWN-A 660 lpc<-* +p ek00291 661 IPD 663 PF00045.10.fs: domain 3 of 4, from 616 to 663: score 73.1, E = 4.7e-21 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg +DAAf ++ ++ktY+F Gdk+Wr+++ ++++dpg+Pkli+d w+ ek00291 616 VDAAFNWSKNKKTYIFAGDKFWRYNEV-KKKMDPGFPKLIADAWN-A 660 lpc<-* +p ek00291 661 IPD 663 PF00045.10.fs: domain 4 of 4, from 665 to 708: score 31.9, E = 9.9e-09 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg +DA++ + +g+ YFFkG +Y ++ ++ + ++ ++ d+ ek00291 665 LDAVVDLQGGGHSYFFKGAYYLKLENQ----SLKSVKFGSIKS--DW 705 lpc<-* l+c ek00291 706 LGC 708 PF00045.10.ls: domain 4 of 4, from 665 to 708: score 33.7, E = 5.8e-07 *->iDAAfedrdrgktYFFkGdkYWrfdpetrqrvdpgyPklisdlwpdg +DA++ + +g+ YFFkG +Y ++ ++ + ++ ++ d+ ek00291 665 LDAVVDLQGGGHSYFFKGAYYLKLENQ----SLKSVKFGSIKS--DW 705 lpc<-* l+c ek00291 706 LGC 708 //