hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-00470022/chunk_1/iprscan-20080809-00470022.nocrc
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Query sequence: ek00291
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00059                                                 323.0      2e-92   3
SM00235                                                 187.7    1.1e-51   1
SM00120                                                 179.2    3.9e-49   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00235    1/1     163   495 ..     1   204 []   187.7  1.1e-51
SM00059    1/3     274   322 ..     1    49 []   101.2  1.2e-25
SM00059    2/3     332   380 ..     1    49 []   105.8  4.9e-27
SM00059    3/3     390   438 ..     1    49 []   116.0  4.2e-30
SM00120    1/4     523   566 ..     1    51 []    29.4  0.00048
SM00120    2/4     568   611 ..     1    51 []    48.8  6.9e-10
SM00120    3/4     616   663 ..     1    51 []    68.4  8.7e-16
SM00120    4/4     665   708 .]     1    51 []    32.5  5.8e-05

Alignments of top-scoring domains:
SM00235: domain 1 of 1, from 163 to 495: score 187.7, E = 1.1e-51
                   *->gskrWpk.tvpYridryfrpsnytsslspeevkltstvreaiarAfq
                      ++++W+k++++Yri       +yt++l+pe      tv++a+arAfq
     ek00291   163    RKPKWDKnQITYRI------IGYTPDLDPE------TVDDAFARAFQ 197  

                   eWsdvTclrFvevtsegtadiyIsFgsgdhvrigdsGcfDgpgGetlsha
                   +WsdvT+lrF+++   g+adi+I Fg+++h   gd+++fDg++G  l+ha
     ek00291   198 VWSDVTPLRFSRIH-DGEADIMINFGRWEH---GDGYPFDGKDG-LLAHA 242  

                   grpgryyfpgigGdqhfslqkSdenwClgfgp..................
                   ++pg    +g+gGd hf++   de w+lg g+  + + ++ +++  + + 
     ek00291   243 FAPG----TGVGGDSHFDD---DELWTLGEGQvvrvkygnadgeyckfpf 285  

                   ..................................................
                     ++++ ++ ++++++++    +++ + +++++ +  +++   + +++ +
     ek00291   286 lfngkeynsctdtgrsdgflwcsttynfekdgkygfcphealftmggnae 335  

                   ..................................................
                   +++ + + + ++++ ++ ++++++++ +  +++++ +++++ +  +++  
     ek00291   336 gqpckfpfrfqgtsydscttegrtdgyrwcgttedydrdkkygfcpetam 385  

                   ..................................................
                   ++ ++++++ +   + +  +++ ++ ++ ++++++    ++ + +++++ 
     ek00291   386 stvggnsegapcvfpftflgnkyesctsagrsdgkmwcattanydddrkw 435  

                   ......gtnlfgvaaHElGHALGlyHeqsRsDGGdkRDnymyinyqnidp
                   +  +++g++lf+vaaHE+GHA+Gl+H+q++++       +m++ y++   
     ek00291   436 gfcpdqGYSLFLVAAHEFGHAMGLEHSQDPGA-------LMAPIYTYT-- 476  

                   gsasernFdlssykidqddslggadipydYGs<-*
                        +nF+ls     qdd+ g   i+++YG+   
     ek00291   477 -----KNFRLS-----QDDIKG---IQELYGA    495  

SM00059: domain 1 of 3, from 274 to 322: score 101.2, E = 1.2e-25
                   *->gnsdGapCvFPFiYrGksYhdCTseGrndgmlWCsTTsnYDrDgkWg
                      gn+dG++C+FPF+++Gk+Y++CT +Gr+dg+lWCsTT n+++Dgk+g
     ek00291   274    GNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYG 320  

                   fC<-*
                   fC   
     ek00291   321 FC    322  

SM00059: domain 2 of 3, from 332 to 380: score 105.8, E = 4.9e-27
                   *->gnsdGapCvFPFiYrGksYhdCTseGrndgmlWCsTTsnYDrDgkWg
                      gn++G+pC+FPF ++G sY++CT+eGr+dg++WC+TT +YDrD+k+g
     ek00291   332    GNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYG 378  

                   fC<-*
                   fC   
     ek00291   379 FC    380  

SM00059: domain 3 of 3, from 390 to 438: score 116.0, E = 4.2e-30
                   *->gnsdGapCvFPFiYrGksYhdCTseGrndgmlWCsTTsnYDrDgkWg
                      gns+GapCvFPF++ G++Y++CTs+Gr+dg+ WC+TT+nYD+D+kWg
     ek00291   390    GNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWG 436  

                   fC<-*
                   fC   
     ek00291   437 FC    438  

SM00120: domain 1 of 4, from 523 to 566: score 29.4, E = 0.00048
                   *->iDAafelr.ktyFFkGdkyWrfdeknsRrrqrvdpgyPklisssfPF
                      +D++ ++r++++FFk+++ Wr    +       +p  P l+++++P 
     ek00291   523    FDGIAQIRgEIFFFKDRFIWRTVTPR------DKPMGPLLVATFWP- 562  

                   dglPc<-*
                     lP    
     ek00291   563 -ELPE    566  

SM00120: domain 2 of 4, from 568 to 611: score 48.8, E = 6.9e-10
                   *->iDAafelr...ktyFFkGdkyWrfdeknsRrrqrvdpgyPklisssf
                      iDA++e ++++k+ FF G+ yW ++  +      +++gyPk+++s+ 
     ek00291   568    IDAVYEAPqeeKAVFFAGNEYWIYSAST------LERGYPKPLTSL- 607  

                   PFdglPc<-*
                      glP+   
     ek00291   608 ---GLPP    611  

SM00120: domain 3 of 4, from 616 to 663: score 68.4, E = 8.7e-16
                   *->iDAafelr...ktyFFkGdkyWrfdeknsRrrqrvdpgyPklisssf
                      +DAaf +++++kty F Gdk+Wr++e     ++++dpg+Pkli++ +
     ek00291   616    VDAAFNWSknkKTYIFAGDKFWRYNEV----KKKMDPGFPKLIADAW 658  

                   PFdglPc<-*
                   +   +P    
     ek00291   659 N--AIPD    663  

SM00120: domain 4 of 4, from 665 to 708: score 32.5, E = 5.8e-05
                   *->iDAafelr...ktyFFkGdkyWrfdeknsRrrqrvdpgyPklisssf
                      +DA++ l+++++ yFFkG +y ++ ++         +   +   +s 
     ek00291   665    LDAVVDLQgggHSYFFKGAYYLKLENQ-------SLKSVKFGSIKS- 703  

                   PFdglPc<-*
                     d+l+c   
     ek00291   704 --DWLGC    708  

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