hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-00532454/chunk_1/iprscan-20080809-00532454.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00353 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01044.9.ls Vinculin family 1715.4 0 1 PF01044.9.fs Vinculin family 1713.5 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01044.9.fs 1/1 45 893 .. 1 1019 [] 1713.5 0 PF01044.9.ls 1/1 45 893 .. 1 1019 [] 1715.4 0 Alignments of top-scoring domains: PF01044.9.fs: domain 1 of 1, from 45 to 893: score 1713.5, E = 0 *->vfrTktvEkiLEPlaqQVsrLVithekgesekdggavkdLtapVaaV ++rT++vE++LEPl++QV++LV+t++kg+s+k++g++k++++++a+V ek00353 45 EIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASV 91 saAvsNlikvGedianesddrILkqdMppAlerVektgqlleeAsrelae ++A++N++++G++ia+es++ Lk+++++A+e+V+k+g+l+++A+ e+a+ ek00353 92 EQATENFLEKGDKIAKESQF--LKEELVAAVEDVRKQGDLMKAAAGEFAD 139 DPySsvaRkklirgaRglLsavsrLLllfDeaeVrkIirvckkVldyLav DP+Ssv+R++++r+aR+lLsav+rLL+l+D+a+V+k++ ++k+V+d + + ek00353 140 DPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILK 189 aevaetmedLvqfvKdlgpeltklnkmvdrRqqELthqvhRdiLvaardt +++a +++dL ++K+l+pe++kln+m+++RqqEL+++ hRd+++aar+ ek00353 190 LRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGI 239 lKklaPiLitAmKifvrhkeepqqgveeAreNRdytakrmsdelneIirV l+k++PiL+tA++++++h p +v+++++NRd ++k++++++++I+++ ek00353 240 LQKNVPILYTASQACLQH---P--DVAAYKANRDLIYKQLQQAVTGISNA 284 lQltsyDEDewdsdnvtvmkkalsaigseLaaAldwLddpnArpGavGEk +Q+t++ ++++++++++g+eLa+Al+++d++ ek00353 285 AQATAS----------DDASQHQGGGGGELAYALNNFDKQ---------- 314 iiRqIiDpatyieercrPsleeriesiisgaasMADslCtlrnrgqpgas ii +Dp++++eer+rPsleer+esiisgaa+MADs+Ct+++r++ ek00353 315 II---VDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRE---- 357 plaivkarrlaEcnGskEisglvaeALqnlqRaGvantAhtleGrlEQAl +iv aEcn ek00353 358 --RIV-----AECN------------------------------------ 364 RWldnPgvDDgGlgrqAlqdLlsEyrklagrkdhgqyrqdldaLcdaIDr ++rqAlqdLlsEy+ +agrk+ ++daL++aID+ ek00353 365 ------------AVRQALQDLLSEYMGNAGRKE------RSDALNSAIDK 396 laaQLADLemrkkgksPaAraianQLqdkLkDLrrqlrkAvvDhVSDsFl m+kk++ DLrrqlrkAv+DhVSDsFl ek00353 397 ---------MTKKTR----------------DLRRQLRKAVMDHVSDSFL 421 DttTPLklLieAAkappdtPGrEenfeekaknFqeHAnrlvevArLaasv +t++PL++LieAAk+ G+E++++e+a++F+eHAn+l+evA+La+s+ ek00353 422 ETNVPLLVLIEAAKN-----GNEKEVKEYAQVFREHANKLIEVANLACSI 466 gpcnNketVeairaaAaqvesLtPQVInAAriLlhnPgSkaAqEhmetlK + nN+e+V+++r++A+q+e+L+PQVInAA+ L+++P+Sk AqE+m+ +K ek00353 467 S--NNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFK 514 nqWedqVrrLTeaVDditdtdDFLavSEehIleDvnkCvvAiqanastPd +qWe+qVr+LT+aVDdit++dDFLavSE+hIleDvnkCv+A+q+ ek00353 515 EQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQE------ 558 enaadpqtLvatAgsIarranRVllVvkaEmdNsEdpvfterVkeAakiL +d+++L++tAg+I++ra+RV++Vv++EmdN+E++v+te+V+eA+k+L ek00353 559 ---KDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLL 605 sntippmvadakevAvnaldpgGltWaaksweenneefldAvrlVyDAvr snt++p++++++e+Av+al+++ +a++++en ef+dA+rlVyD++r ek00353 606 SNTVMPRFTEQVEAAVEALSSD----PAQPMDEN--EFIDASRLVYDGIR 649 GvpqsrdirkavLmnrlpeelptdseledklviqEdepadprppspvete dirkavLm+r+peel +ds++e +Ed +d+r++++v+te ek00353 650 ------DIRKAVLMIRTPEEL-DDSDFE-----TED--FDVRSRTSVQTE 685 pqpprpppppetdreemrrlfeEeKakiaaqvqpflaaarkLhqEvaKWd + +++++++++r++m++l++E+Kakia+qv+ f+++++kL++Ev+KWd ek00353 686 D---DQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWD 732 skGNDIIalAKrMailMaeMsdlvRGkGpLktkrDlInaAKkIAeaseev ++GNDII+lAK+M+++M+eM+d++RGkGpLk+++D+I+aAKkIAea++++ ek00353 733 DSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRM 782 trLAreiArqCtDsrirtdLLavleRIplictQLkIlSkVKAtvlgignv ++L+r+iA++C+Ds++++dLLa+l+RI+l+c+QL+I+SkVKA+v+++g+ ek00353 783 DKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGG- 831 iGPYGqPvElsvedleqaaesLvqnAqNLMqSVkeTVraAevASiKiRtd El+v++ + +a+sL+q+A+NLM++V++TV+a++vAS+K++ + ek00353 832 --------ELVVSGVD-SAMSLIQAAKNLMNAVVQTVKASYVASTKYQ-K 871 qqgagtvssprlrWkrKaPwkq<-* +qg+++++ p+++Wk+KaP+k+ ek00353 872 SQGMASLNLPAVSWKMKAPEKK 893 PF01044.9.ls: domain 1 of 1, from 45 to 893: score 1715.4, E = 0 *->vfrTktvEkiLEPlaqQVsrLVithekgesekdggavkdLtapVaaV ++rT++vE++LEPl++QV++LV+t++kg+s+k++g++k++++++a+V ek00353 45 EIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASV 91 saAvsNlikvGedianesddrILkqdMppAlerVektgqlleeAsrelae ++A++N++++G++ia+es++ Lk+++++A+e+V+k+g+l+++A+ e+a+ ek00353 92 EQATENFLEKGDKIAKESQF--LKEELVAAVEDVRKQGDLMKAAAGEFAD 139 DPySsvaRkklirgaRglLsavsrLLllfDeaeVrkIirvckkVldyLav DP+Ssv+R++++r+aR+lLsav+rLL+l+D+a+V+k++ ++k+V+d + + ek00353 140 DPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILK 189 aevaetmedLvqfvKdlgpeltklnkmvdrRqqELthqvhRdiLvaardt +++a +++dL ++K+l+pe++kln+m+++RqqEL+++ hRd+++aar+ ek00353 190 LRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGI 239 lKklaPiLitAmKifvrhkeepqqgveeAreNRdytakrmsdelneIirV l+k++PiL+tA++++++h p +v+++++NRd ++k++++++++I+++ ek00353 240 LQKNVPILYTASQACLQH---P--DVAAYKANRDLIYKQLQQAVTGISNA 284 lQltsyDEDewdsdnvtvmkkalsaigseLaaAldwLddpnArpGavGEk +Q+t++ ++++++++++g+eLa+Al+++d++ ek00353 285 AQATAS----------DDASQHQGGGGGELAYALNNFDKQ---------- 314 iiRqIiDpatyieercrPsleeriesiisgaasMADslCtlrnrgqpgas ii +Dp++++eer+rPsleer+esiisgaa+MADs+Ct+++r++ ek00353 315 II---VDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRE---- 357 plaivkarrlaEcnGskEisglvaeALqnlqRaGvantAhtleGrlEQAl +iv aEcn ek00353 358 --RIV-----AECN------------------------------------ 364 RWldnPgvDDgGlgrqAlqdLlsEyrklagrkdhgqyrqdldaLcdaIDr ++rqAlqdLlsEy+ +agrk+ ++daL++aID+ ek00353 365 ------------AVRQALQDLLSEYMGNAGRKE------RSDALNSAIDK 396 laaQLADLemrkkgksPaAraianQLqdkLkDLrrqlrkAvvDhVSDsFl m+kk++ DLrrqlrkAv+DhVSDsFl ek00353 397 ---------MTKKTR----------------DLRRQLRKAVMDHVSDSFL 421 DttTPLklLieAAkappdtPGrEenfeekaknFqeHAnrlvevArLaasv +t++PL++LieAAk+ G+E++++e+a++F+eHAn+l+evA+La+s+ ek00353 422 ETNVPLLVLIEAAKN-----GNEKEVKEYAQVFREHANKLIEVANLACSI 466 gpcnNketVeairaaAaqvesLtPQVInAAriLlhnPgSkaAqEhmetlK + nN+e+V+++r++A+q+e+L+PQVInAA+ L+++P+Sk AqE+m+ +K ek00353 467 S--NNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFK 514 nqWedqVrrLTeaVDditdtdDFLavSEehIleDvnkCvvAiqanastPd +qWe+qVr+LT+aVDdit++dDFLavSE+hIleDvnkCv+A+q+ ek00353 515 EQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQE------ 558 enaadpqtLvatAgsIarranRVllVvkaEmdNsEdpvfterVkeAakiL +d+++L++tAg+I++ra+RV++Vv++EmdN+E++v+te+V+eA+k+L ek00353 559 ---KDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLL 605 sntippmvadakevAvnaldpgGltWaaksweenneefldAvrlVyDAvr snt++p++++++e+Av+al+++ +a++++en ef+dA+rlVyD++r ek00353 606 SNTVMPRFTEQVEAAVEALSSD----PAQPMDEN--EFIDASRLVYDGIR 649 GvpqsrdirkavLmnrlpeelptdseledklviqEdepadprppspvete dirkavLm+r+peel +ds++e +Ed +d+r++++v+te ek00353 650 ------DIRKAVLMIRTPEEL-DDSDFE-----TED--FDVRSRTSVQTE 685 pqpprpppppetdreemrrlfeEeKakiaaqvqpflaaarkLhqEvaKWd + +++++++++r++m++l++E+Kakia+qv+ f+++++kL++Ev+KWd ek00353 686 D---DQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWD 732 skGNDIIalAKrMailMaeMsdlvRGkGpLktkrDlInaAKkIAeaseev ++GNDII+lAK+M+++M+eM+d++RGkGpLk+++D+I+aAKkIAea++++ ek00353 733 DSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRM 782 trLAreiArqCtDsrirtdLLavleRIplictQLkIlSkVKAtvlgignv ++L+r+iA++C+Ds++++dLLa+l+RI+l+c+QL+I+SkVKA+v+++g+ ek00353 783 DKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGG- 831 iGPYGqPvElsvedleqaaesLvqnAqNLMqSVkeTVraAevASiKiRtd El+v++ + +a+sL+q+A+NLM++V++TV+a++vAS+K++ + ek00353 832 --------ELVVSGVD-SAMSLIQAAKNLMNAVVQTVKASYVASTKYQ-K 871 qqgagtvssprlrWkrKaPwkq<-* +qg+++++ p+++Wk+KaP+k+ ek00353 872 SQGMASLNLPAVSWKMKAPEKK 893 //