hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-01001091/chunk_1/iprscan-20080809-01001091.nocrc
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Query sequence: ek00356
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08766.1.ls DEK C terminal domain                           92.5    1.2e-24   1
PF08766.1.fs DEK C terminal domain                           90.5    4.8e-24   1
PF02037.17.fs SAP domain                                      37.0    3.1e-09   1
PF02037.17.ls SAP domain                                      39.0    1.5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02037.17.fs   1/1     169   203 ..     1    35 []    37.0  3.1e-09
PF02037.17.ls   1/1     169   203 ..     1    35 []    39.0  1.5e-08
PF08766.1.fs   1/1     341   395 .]     1    56 []    90.5  4.8e-24
PF08766.1.ls   1/1     341   395 .]     1    56 []    92.5  1.2e-24

Alignments of top-scoring domains:
PF02037.17.fs: domain 1 of 1, from 169 to 203: score 37.0, E = 3.1e-09
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      l+k++ ++LK++++ + L+ sG+ +eLv+R+l++l   
     ek00356   169    LKKFRNAMLKSICEVLDLERSGVNSELVKRILNFL    203  

PF02037.17.ls: domain 1 of 1, from 169 to 203: score 39.0, E = 1.5e-08
                   *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-*
                      l+k++ ++LK++++ + L+ sG+ +eLv+R+l++l   
     ek00356   169    LKKFRNAMLKSICEVLDLERSGVNSELVKRILNFL    203  

PF08766.1.fs: domain 1 of 1, from 341 to 395: score 90.5, E = 4.8e-24
                   *->sdeeikeaireILkeaDLdtvTkKqvRkeLEerlPgvdLsekkKafI
                      +dee+ke+i+++L++a+L++vT+Kq++k+++e++P++dL+e+ K+fI
     ek00356   341    TDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTER-KDFI 386  

                   kslIeeiLa<-*
                   k +++e+++   
     ek00356   387 KTTVKELIS    395  

PF08766.1.ls: domain 1 of 1, from 341 to 395: score 92.5, E = 1.2e-24
                   *->sdeeikeaireILkeaDLdtvTkKqvRkeLEerlPgvdLsekkKafI
                      +dee+ke+i+++L++a+L++vT+Kq++k+++e++P++dL+e+ K+fI
     ek00356   341    TDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTER-KDFI 386  

                   kslIeeiLa<-*
                   k +++e+++   
     ek00356   387 KTTVKELIS    395  

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