hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-01064404/chunk_1/iprscan-20080809-01064404.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00360 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 633.2 2e-187 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 631.3 7.5e-187 1 PF00397.16.ls WW domain 233.6 3.9e-67 4 PF00397.16.fs WW domain 225.6 1e-64 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00397.16.fs 1/4 30 59 .. 1 30 [] 56.3 8.5e-15 PF00397.16.ls 1/4 30 59 .. 1 30 [] 58.3 2.3e-14 PF00397.16.ls 2/4 62 91 .. 1 30 [] 58.0 2.9e-14 PF00397.16.fs 2/4 62 91 .. 1 30 [] 56.0 1e-14 PF00397.16.ls 3/4 142 171 .. 1 30 [] 62.2 1.6e-15 PF00397.16.fs 3/4 142 171 .. 1 30 [] 60.2 7.1e-16 PF00397.16.ls 4/4 182 211 .. 1 30 [] 55.1 2.1e-13 PF00397.16.fs 4/4 182 211 .. 1 30 [] 53.1 6.6e-14 PF00632.15.fs 1/1 300 605 .] 1 351 [] 631.3 7.5e-187 PF00632.15.ls 1/1 300 605 .] 1 351 [] 633.2 2e-187 Alignments of top-scoring domains: PF00397.16.fs: domain 1 of 4, from 30 to 59: score 56.3, E = 8.5e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r d++Gr+YY++h+ k+T+W++P ek00360 30 LPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 59 PF00397.16.ls: domain 1 of 4, from 30 to 59: score 58.3, E = 2.3e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r d++Gr+YY++h+ k+T+W++P ek00360 30 LPPGWEQRVDQHGRVYYVDHVEKRTTWDRP 59 PF00397.16.ls: domain 2 of 4, from 62 to 91: score 58.0, E = 2.9e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r d Gr+YY++h T+tT+W++P ek00360 62 LPPGWERRVDNMGRIYYVDHFTRTTTWQRP 91 PF00397.16.fs: domain 2 of 4, from 62 to 91: score 56.0, E = 1e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r d Gr+YY++h T+tT+W++P ek00360 62 LPPGWERRVDNMGRIYYVDHFTRTTTWQRP 91 PF00397.16.ls: domain 3 of 4, from 142 to 171: score 62.2, E = 1.6e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+rtd++Gr+Y++NhnT+ TqWe P ek00360 142 LPPGWEKRTDSNGRVYFVNHNTRITQWEYP 171 PF00397.16.fs: domain 3 of 4, from 142 to 171: score 60.2, E = 7.1e-16 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+rtd++Gr+Y++NhnT+ TqWe P ek00360 142 LPPGWEKRTDSNGRVYFVNHNTRITQWEYP 171 PF00397.16.ls: domain 4 of 4, from 182 to 211: score 55.1, E = 2.1e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp+gWe+r++ dG pY+++hn +tT++++P ek00360 182 LPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 211 PF00397.16.fs: domain 4 of 4, from 182 to 211: score 53.1, E = 6.6e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp+gWe+r++ dG pY+++hn +tT++++P ek00360 182 LPEGWEMRFTVDGIPYFVDHNRRTTTYIDP 211 PF00632.15.fs: domain 1 of 1, from 300 to 605: score 631.3, E = 7.5e-187 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Lls+e++nP+y+LFey+ +d+y+lqinP+s++ np+ ek00360 300 FLLSHEVLNPMYCLFEYA----------GKDNYCLQINPASYI-NPD 335 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hlkyF+FiGr++++Al++g+++d F+++FYK++L +kpv l+Dles+D ek00360 336 HLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRIL--NKPVGLKDLESID 383 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas Pe+ynSL+w++en+++ e+dLe++Fsv+ e + ek00360 384 PEFYNSLIWVKENNIE-----------ECDLEMYFSVDKEI---L----- 414 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk Ge+k ++ LkPnG nI VT+eNk+eY+++++e+rL +g+e+Q++AF + ek00360 415 --GEIKSHD-LKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFE 461 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GFne++p++ L++Fd++ELe L+cG++e iD++d++++ +Y+ +Y ++s+ ek00360 462 GFNEILPQQYLQYFDAKELEVLLCGMQE-IDLNDWQRHAIYR-HYARTSK 509 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +I wFW+ v+e ++e+r +LLqFvTG++R+P+gGF++L+ GsnGp+k ek00360 510 --QIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLM--GSNGPQK 555 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG F+Iekv g++++LP++HTCFNrLdLPpY+S+E+L+ekLl AI eeteG ek00360 556 FCIEKV---GKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAI-EETEG 601 Fgle<-* Fg+e ek00360 602 FGQE 605 PF00632.15.ls: domain 1 of 1, from 300 to 605: score 633.2, E = 2e-187 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Lls+e++nP+y+LFey+ +d+y+lqinP+s++ np+ ek00360 300 FLLSHEVLNPMYCLFEYA----------GKDNYCLQINPASYI-NPD 335 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hlkyF+FiGr++++Al++g+++d F+++FYK++L +kpv l+Dles+D ek00360 336 HLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRIL--NKPVGLKDLESID 383 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas Pe+ynSL+w++en+++ e+dLe++Fsv+ e + ek00360 384 PEFYNSLIWVKENNIE-----------ECDLEMYFSVDKEI---L----- 414 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk Ge+k ++ LkPnG nI VT+eNk+eY+++++e+rL +g+e+Q++AF + ek00360 415 --GEIKSHD-LKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFE 461 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GFne++p++ L++Fd++ELe L+cG++e iD++d++++ +Y+ +Y ++s+ ek00360 462 GFNEILPQQYLQYFDAKELEVLLCGMQE-IDLNDWQRHAIYR-HYARTSK 509 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +I wFW+ v+e ++e+r +LLqFvTG++R+P+gGF++L+ GsnGp+k ek00360 510 --QIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLM--GSNGPQK 555 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG F+Iekv g++++LP++HTCFNrLdLPpY+S+E+L+ekLl AI eeteG ek00360 556 FCIEKV---GKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAI-EETEG 601 Fgle<-* Fg+e ek00360 602 FGQE 605 //