hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-01064404/chunk_1/iprscan-20080809-01064404.nocrc
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Query sequence: ek00360
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00119                                                 607.6   4.3e-178   1
SM00456                                                 221.7    6.5e-62   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00456    1/4      29    61 ..     1    34 []    57.5  1.8e-12
SM00456    2/4      62    93 ..     1    34 []    49.0    6e-10
SM00456    3/4     141   173 ..     1    34 []    61.7  9.3e-14
SM00456    4/4     181   213 ..     1    34 []    53.5  2.8e-11
SM00119    1/1     269   605 .]     1   407 []   607.6 4.3e-178

Alignments of top-scoring domains:
SM00456: domain 1 of 4, from 29 to 61: score 57.5, E = 1.8e-12
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plPpgWe+r d+  Gr+YY++h+ k+t+W++P++   
     ek00360    29    PLPPGWEQRVDQH-GRVYYVDHVEKRTTWDRPEP    61   

SM00456: domain 2 of 4, from 62 to 93: score 49.0, E = 6e-10
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                       lPpgWe+r d+  Gr+YY++h T++t+W++P++   
     ek00360    62    -LPPGWERRVDNM-GRIYYVDHFTRTTTWQRPTL    93   

SM00456: domain 3 of 4, from 141 to 173: score 61.7, E = 9.3e-14
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plPpgWe+r+d + Gr+Y++Nh+T+ tqWe Pr+   
     ek00360   141    PLPPGWEKRTDSN-GRVYFVNHNTRITQWEYPRS    173  

SM00456: domain 4 of 4, from 181 to 213: score 53.5, E = 2.8e-11
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plP+gWe+r++ d G pY+++h+ ++t++ +Pr    
     ek00360   181    PLPEGWEMRFTVD-GIPYFVDHNRRTTTYIDPRT    213  

SM00119: domain 1 of 1, from 269 to 605: score 607.6, E = 4.3e-178
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                       +sp+dL++r    L ++f       gEeglD+GGv rE+fflls+e
     ek00360   269    SFSPQDLRRR----LWVIF------PGEEGLDYGGVAREWFFLLSHE 305  

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                   ++np +y+LF+y + dn             y+L++nP++++ n++hl+  
     ek00360   306 VLNP-MYCLFEYAGKDN-------------YCLQINPASYI-NPDHLK-- 338  

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                   yFrfiGr++++Al++++++D  F++pFyK +L+kp    v l+Dles+DP
     ek00360   339 YFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKP----VGLKDLESIDP 384  

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                   e+y+sL w                    +en+i+e++l+   +F +v+ +
     ek00360   385 EFYNSLIWV-------------------KENNIEECDLE--MYF-SVDKE 412  

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                    +ge k ++Lkp+G ni VTeeNk+EY++ v+e+rl +gve+q+ AF eG
     ek00360   413 ILGEIKSHDLKPNGGNILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEG 462  

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   F+e++p+  L+ +Fd++ELe L+cG++ eid++d++ +++yr +Y ++s+
     ek00360   463 FNEILPQQYLQ-YFDAKELEVLLCGMQ-EIDLNDWQRHAIYR-HYARTSK 509  

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq
                   +i    wFW+ v + +ne+r +LLqFVTG++rlP  vgGFa+L +sNGpq
     ek00360   510 QI---MWFWQFVKEIDNEKRMRLLQFVTGTCRLP--VGGFADLMGSNGPQ 554  

                   kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg
                   kF+I+k+g     ++ +LP++hTCfNrL+LPpY S+e+L+eKLL AI+e 
     ek00360   555 KFCIEKVG-----KENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEE- 598  

                   RiggeGFgls<-*
                      +eGFg++   
     ek00360   599 ---TEGFGQE    605  

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