hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-07223993/chunk_1/iprscan-20090618-07223993.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00374 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01436.11.ls NHL repeat 234.7 1.8e-67 6 PF01436.11.fs NHL repeat 223.0 6.3e-64 6 PF00630.9.fs Filamin/ABP280 repeat 56.2 5.3e-16 1 PF00643.14.ls B-box zinc finger 60.2 6.1e-15 1 PF00643.14.fs B-box zinc finger 58.4 2.2e-14 1 PF00630.9.ls Filamin/ABP280 repeat 58.2 2.5e-14 1 PF00097.15.fs Zinc finger, C3HC4 type (RING finger) 31.7 9.6e-11 1 PF00097.15.ls Zinc finger, C3HC4 type (RING finger) 33.5 6.9e-07 1 PF08450.2.fs SMP-30/Gluconolaconase/LRE-like region 20.9 1e-05 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00097.15.fs 1/1 56 96 .. 1 50 [] 31.7 9.6e-11 PF00097.15.ls 1/1 56 96 .. 1 50 [] 33.5 6.9e-07 PF00643.14.ls 1/1 144 185 .. 1 50 [] 60.2 6.1e-15 PF00643.14.fs 1/1 144 185 .. 1 50 [] 58.4 2.2e-14 PF00630.9.ls 1/1 355 449 .. 1 97 [] 58.2 2.5e-14 PF00630.9.fs 1/1 355 449 .. 1 97 [] 56.2 5.3e-16 PF01436.11.ls 1/6 520 547 .. 1 29 [] 36.2 1.1e-07 PF01436.11.fs 1/6 520 547 .. 1 29 [] 34.2 2.6e-08 PF01436.11.ls 2/6 567 594 .. 1 29 [] 41.5 2.7e-09 PF01436.11.fs 2/6 567 594 .. 1 29 [] 39.5 9e-10 PF01436.11.fs 3/6 609 636 .. 1 29 [] 28.6 9.4e-07 PF01436.11.ls 3/6 609 636 .. 1 29 [] 30.5 5.3e-06 PF01436.11.fs 4/6 656 683 .. 1 29 [] 39.0 1.3e-09 PF01436.11.ls 4/6 656 683 .. 1 29 [] 40.9 4e-09 PF01436.11.fs 5/6 703 730 .. 1 29 [] 47.6 5.3e-12 PF01436.11.ls 5/6 703 730 .. 1 29 [] 49.6 9.8e-12 PF08450.2.fs 3/3 708 737 .. 211 241 .. 18.9 4e-05 PF01436.11.fs 6/6 747 774 .. 1 29 [] 34.0 3e-08 PF01436.11.ls 6/6 747 774 .. 1 29 [] 36.0 1.2e-07 Alignments of top-scoring domains: PF00097.15.fs: domain 1 of 1, from 56 to 96: score 31.7, E = 9.6e-11 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt C ICl+ + p+ +lpC+H+ fC+ Cl++++ +s + + ek00374 56 CSICLDRYQCPK-----VLPCLHT-----FCERCLQNYIPAqSLTLS 92 CplC<-* Cp+C ek00374 93 CPVC 96 PF00097.15.ls: domain 1 of 1, from 56 to 96: score 33.5, E = 6.9e-07 *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt C ICl+ + p+ +lpC+H+ fC+ Cl++++ +s + + ek00374 56 CSICLDRYQCPK-----VLPCLHT-----FCERCLQNYIPAqSLTLS 92 CplC<-* Cp+C ek00374 93 CPVC 96 PF00643.14.ls: domain 1 of 1, from 144 to 185: score 60.2, E = 6.1e-15 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv +++ +Cp+H+ +++++++Ce++++++C +Cr eH r H + ek00374 144 GRPLSCPNHE-GKTMEFYCEACETAMCGECRAG-EH------REHGT 182 vpl<-* v+l ek00374 183 VLL 185 PF00643.14.fs: domain 1 of 1, from 144 to 185: score 58.4, E = 2.2e-14 *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv +++ +Cp+H+ +++++++Ce++++++C +Cr eH r H + ek00374 144 GRPLSCPNHE-GKTMEFYCEACETAMCGECRAG-EH------REHGT 182 vpl<-* v+l ek00374 183 VLL 185 PF00630.9.ls: domain 1 of 1, from 355 to 449: score 58.2, E = 2.5e-14 *->DaskVkAyGPGLeptggkvgkPAeFtvdavdagge.tlAaGggglsV a+ A G GL + vg+PA+ tv ++d++g ++ G+ +l+ ek00374 355 TAHETVATGEGLR--QALVGQPASLTVTTKDKDGRlVRT-GSAELRA 398 kVeGPsgapvevkvtDngDGTYtVsYtPtepGdYtvnVtygGehIPgSPF + GP+g +v v+D+++GTY Yt++ +G+ +V++ G+++ gSPF ek00374 399 EITGPDGTRLPVPVVDHKNGTYELVYTARTEGELLLSVLLYGQPVRGSPF 448 k<-* + ek00374 449 R 449 PF00630.9.fs: domain 1 of 1, from 355 to 449: score 56.2, E = 5.3e-16 *->DaskVkAyGPGLeptggkvgkPAeFtvdavdagge.tlAaGggglsV a+ A G GL + vg+PA+ tv ++d++g ++ G+ +l+ ek00374 355 TAHETVATGEGLR--QALVGQPASLTVTTKDKDGRlVRT-GSAELRA 398 kVeGPsgapvevkvtDngDGTYtVsYtPtepGdYtvnVtygGehIPgSPF + GP+g +v v+D+++GTY Yt++ +G+ +V++ G+++ gSPF ek00374 399 EITGPDGTRLPVPVVDHKNGTYELVYTARTEGELLLSVLLYGQPVRGSPF 448 k<-* + ek00374 449 R 449 PF01436.11.ls: domain 1 of 6, from 520 to 547: score 36.2, E = 1.1e-07 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + + +Gv s+Gr++VaDs+n ++qvf ek00374 520 FTNLQGVSAA-SSGRIVVADSNNQCIQVF 547 PF01436.11.fs: domain 1 of 6, from 520 to 547: score 34.2, E = 2.6e-08 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + + +Gv s+Gr++VaDs+n ++qvf ek00374 520 FTNLQGVSAA-SSGRIVVADSNNQCIQVF 547 PF01436.11.ls: domain 2 of 6, from 567 to 594: score 41.5, E = 2.7e-09 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+rP+Gvavd ++G+++VaD++n v +f ek00374 567 LQRPTGVAVD-TNGDIIVADYDNRWVSIF 594 PF01436.11.fs: domain 2 of 6, from 567 to 594: score 39.5, E = 9e-10 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+rP+Gvavd ++G+++VaD++n v +f ek00374 567 LQRPTGVAVD-TNGDIIVADYDNRWVSIF 594 PF01436.11.fs: domain 3 of 6, from 609 to 636: score 28.6, E = 9.4e-07 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l P Gvavd ++G+++V+D+ +v+ f ek00374 609 LMGPKGVAVD-RNGHIIVVDNKSCCVFTF 636 PF01436.11.ls: domain 3 of 6, from 609 to 636: score 30.5, E = 5.3e-06 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l P Gvavd ++G+++V+D+ +v+ f ek00374 609 LMGPKGVAVD-RNGHIIVVDNKSCCVFTF 636 PF01436.11.fs: domain 4 of 6, from 656 to 683: score 39.0, E = 1.3e-09 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + Ph vav+ ++++++V+D++nh v+v+ ek00374 656 FAGPHFVAVN-NKNEIVVTDFHNHSVKVY 683 PF01436.11.ls: domain 4 of 6, from 656 to 683: score 40.9, E = 4e-09 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* + Ph vav+ ++++++V+D++nh v+v+ ek00374 656 FAGPHFVAVN-NKNEIVVTDFHNHSVKVY 683 PF01436.11.fs: domain 5 of 6, from 703 to 730: score 47.6, E = 5.3e-12 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* +n P+Gvavd s+G+++VaD +n+r+qvf ek00374 703 FNAPTGVAVD-SNGNIIVADWGNSRIQVF 730 PF01436.11.ls: domain 5 of 6, from 703 to 730: score 49.6, E = 9.8e-12 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* +n P+Gvavd s+G+++VaD +n+r+qvf ek00374 703 FNAPTGVAVD-SNGNIIVADWGNSRIQVF 730 PF08450.2.fs: domain 3 of 3, from 708 to 737: score 18.9, E = 4e-05 *->GmaiDaeGnlWvAlwgggkVvrfdPdtGkll<-* G a+D++Gn+ vA wg++++++fd + G l ek00374 708 GVAVDSNGNIIVADWGNSRIQVFDSS-GSFL 737 PF01436.11.fs: domain 6 of 6, from 747 to 774: score 34.0, E = 3e-08 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+ P+G+a++ sdG+v+VaD +nh+ + + ek00374 747 LYGPQGLALT-SDGHVVVADAGNHCFKAY 774 PF01436.11.ls: domain 6 of 6, from 747 to 774: score 36.0, E = 1.2e-07 *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-* l+ P+G+a++ sdG+v+VaD +nh+ + + ek00374 747 LYGPQGLALT-SDGHVVVADAGNHCFKAY 774 //