hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-07223993/chunk_1/iprscan-20090618-07223993.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ek00374
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00502                                                 156.4    2.9e-42   1
SM00557                                                 131.4    9.5e-35   1
SM00336                                                  62.2    6.5e-14   1
SM00184                                                  42.7    4.8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00184    1/1      56    96 ..     1    23 []    42.7  4.8e-08
SM00336    1/1     144   185 ..     1    51 []    62.2  6.5e-14
SM00502    1/1     192   318 ..     1   132 []   156.4  2.9e-42
SM00557    1/1     355   455 ..     1   119 []   131.4  9.5e-35

Alignments of top-scoring domains:
SM00184: domain 1 of 1, from 56 to 96: score 42.7, E = 4.8e-08
                   *->CpICle....pvvlpCgH.FCr.Ci............CPlC<-*
                      C+ICl++ + p+vlpC H+FC++C+++  + ++ + +CP+C   
     ek00374    56    CSICLDryqcPKVLPCLHtFCErCLqnyipaqsltlsCPVC    96   

SM00336: domain 1 of 1, from 144 to 185: score 62.2, E = 6.5e-14
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +r++ C++H+ ++++ef+C e++++++C +C+   eH      r H 
     ek00374   144    GRPLSCPNHE-GKTMEFYC-EACETAMCGECRAG-EH------REHG 181  

                   vvll<-*
                   +vll   
     ek00374   182 TVLL    185  

SM00502: domain 1 of 1, from 192 to 318: score 156.4, E = 2.9e-42
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      +++aL+ +le++r + ++l++a++ +++i+q+++     e+++e+ a
     ek00374   192    HKAALQRQLEAVRGRLPQLSAAIALVGGISQQLQ-----ERKAEALA 233  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                   +i aaf++L +aL++rk++L++dLe+++++k+k+L++Ql++l+q+qe+++
     ek00374   234 QISAAFEDLEQALQQRKQALVSDLETICGAKQKVLQSQLDTLRQGQEHIG 283  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   + ++fae+aL+ g+  e+Ll++k++ erl+ l++q   
     ek00374   284 SSCSFAEQALRLGSAPEVLLVRKHMRERLAALAAQ    318  

SM00557: domain 1 of 1, from 355 to 455: score 131.4, E = 9.5e-35
                   *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd
                       a+ ++a+     G+GL ++     vg+pa   ++tv+tk+ +g+  
     ek00374   355    TAHETVAT-----GEGLRQA----LVGQPA---SLTVTTKDKDGR-- 387  

                   plt.GggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdy
                    + +G++el+++++gP+G     +  pv v+d+++Gty   Yt++++G+ 
     ek00374   388 LVRtGSAELRAEITGPDG-----TRLPVPVVDHKNGTYELVYTARTEGEL 432  

                   tvsVkfnGehipgSPFtvkVgpa<-*
                    +sV++ G++++gSPF+v++  +   
     ek00374   433 LLSVLLYGQPVRGSPFRVRALRP    455  

//