hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-01253879/chunk_1/iprscan-20080809-01253879.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ek00381 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00651.21.ls BTB/POZ domain 131.7 1.9e-36 1 PF00651.21.fs BTB/POZ domain 129.9 6.6e-36 1 PF07707.5.ls BTB And C-terminal Kelch 125.2 1.6e-34 1 PF07707.5.fs BTB And C-terminal Kelch 123.3 6.4e-34 1 PF01344.15.fs Kelch motif 91.7 3.1e-25 4 PF01344.15.ls Kelch motif 92.2 1.5e-24 4 PF07646.5.fs Kelch motif 35.9 6.6e-09 3 PF07646.5.ls Kelch motif 39.2 1.3e-08 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 25 132 .. 1 135 [] 131.7 1.9e-36 PF00651.21.fs 1/1 25 132 .. 1 135 [] 129.9 6.6e-36 PF07707.5.fs 1/1 137 238 .. 1 103 [] 123.3 6.4e-34 PF07707.5.ls 1/1 137 238 .. 1 103 [] 125.2 1.6e-34 PF01344.15.ls 1/4 309 371 .. 1 45 [] 13.8 0.099 PF01344.15.fs 1/4 314 371 .. 6 45 .] 15.6 0.0013 PF01344.15.fs 2/4 373 420 .. 1 45 [] 43.0 2.1e-11 PF07646.5.fs 2/3 373 420 .. 1 54 [] 21.6 5.2e-05 PF01344.15.ls 2/4 373 420 .. 1 45 [] 45.0 2.3e-10 PF07646.5.ls 1/2 373 420 .. 1 54 [] 23.5 0.0007 PF01344.15.ls 4/4 462 520 .. 1 45 [] 31.3 3.1e-06 PF07646.5.ls 2/2 462 520 .. 1 54 [] 15.7 0.16 PF01344.15.fs 4/4 462 520 .. 1 45 [] 29.3 1.7e-07 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 25 to 132: score 131.7, E = 1.9e-36 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l+ +++q ++D++L v+ g +f++HK+vLa cS+YF+a+ ek00381 25 LKLFYEQQLFTDIVLIVE--------GTEFPCHKMVLATCSSYFRAM 63 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F ++ +es+++ ++ l++v++ ++++++ ++Ytg l ++ ek00381 64 FMSG------LSESKQT-HVHLRNVDAATLQIIITYAYTGNLAMN----- 101 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +++ve+l ++A ++lq++++ + C e+lik++ ek00381 102 ------DSTVEQLYETA-CFLQVEDVLQRCREYLIKKI 132 PF00651.21.fs: domain 1 of 1, from 25 to 132: score 129.9, E = 6.6e-36 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l+ +++q ++D++L v+ g +f++HK+vLa cS+YF+a+ ek00381 25 LKLFYEQQLFTDIVLIVE--------GTEFPCHKMVLATCSSYFRAM 63 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F ++ +es+++ ++ l++v++ ++++++ ++Ytg l ++ ek00381 64 FMSG------LSESKQT-HVHLRNVDAATLQIIITYAYTGNLAMN----- 101 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* +++ve+l ++A ++lq++++ + C e+lik++ ek00381 102 ------DSTVEQLYETA-CFLQVEDVLQRCREYLIKKI 132 PF07707.5.fs: domain 1 of 1, from 137 to 238: score 123.3, E = 6.4e-34 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ +++fAd ++ceeL+++A+r++++ F++V++++ F+qLs++ Li+ ek00381 137 CVRLLSFADLFSCEELKQSAKRMVEHKFTAVYHQDAFMQLSHDLLID 183 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +LssD LnV++Ee+V eA+m W+ ++ e+R ++l+ +Ls++R+ Ls+ ek00381 184 ILSSDNLNVEKEETVREAAMLWLEYNTESRSQYLSSVLSQIRIDALSEVT 233 Llevve<-* ++++ ek00381 234 -QRAWF 238 PF07707.5.ls: domain 1 of 1, from 137 to 238: score 125.2, E = 1.6e-34 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie C+ +++fAd ++ceeL+++A+r++++ F++V++++ F+qLs++ Li+ ek00381 137 CVRLLSFADLFSCEELKQSAKRMVEHKFTAVYHQDAFMQLSHDLLID 183 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky +LssD LnV++Ee+V eA+m W+ ++ e+R ++l+ +Ls++R+ Ls+ ek00381 184 ILSSDNLNVEKEETVREAAMLWLEYNTESRSQYLSSVLSQIRIDALSEVT 233 Llevve<-* ++++ ek00381 234 -QRAWF 238 PF01344.15.ls: domain 1 of 4, from 309 to 371: score 13.8, E = 0.099 *->pRsgagvvvldgkiYviGGydg..................qslnsve +vv+ d+ iY++GG+ + ++++++++++++ ++ + +n+++ ek00381 309 LHKVGTVVTPDNDIYIAGGQVPlkntktnhsktsklqtafRTVNCFY 355 vYDpetntWtklpsmp<-* +D ntW + ++m ek00381 356 WFDAQQNTWFPKTPML 371 PF01344.15.fs: domain 1 of 4, from 314 to 371: score 15.6, E = 0.0013 *->gvvvldgkiYviGGydg..................qslnsvevYDpe +vv+ d+ iY++GG+ + ++++++++++++ ++ + +n+++ +D ek00381 314 TVVTPDNDIYIAGGQVPlkntktnhsktsklqtafRTVNCFYWFDAQ 360 tntWtklpsmp<-* ntW + ++m ek00381 361 QNTWFPKTPML 371 PF01344.15.fs: domain 2 of 4, from 373 to 420: score 43.0, E = 2.1e-11 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R + v+++g+iY+iGG + +++ ++ve+YD+e+++Wt+++++ ek00381 373 VRIKPSLVCCEGYIYAIGGDSVggeLNRRTVERYDTEKDEWTMVSPL 419 p<-* p ek00381 420 P 420 PF07646.5.fs: domain 2 of 3, from 373 to 420: score 21.6, E = 5.2e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++v+++g +y +GG + +g + +++ ++d+e+ +W ek00381 373 VRIKPSLVCCEGYIYAIGGD------SVGGELNRRTVERYDTEKDEW 413 eklpalp<-* + +++lp ek00381 414 TMVSPLP 420 PF01344.15.ls: domain 2 of 4, from 373 to 420: score 45.0, E = 2.3e-10 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R + v+++g+iY+iGG + +++ ++ve+YD+e+++Wt+++++ ek00381 373 VRIKPSLVCCEGYIYAIGGDSVggeLNRRTVERYDTEKDEWTMVSPL 419 p<-* p ek00381 420 P 420 PF07646.5.ls: domain 1 of 2, from 373 to 420: score 23.5, E = 0.0007 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW r ++v+++g +y +GG + +g + +++ ++d+e+ +W ek00381 373 VRIKPSLVCCEGYIYAIGGD------SVGGELNRRTVERYDTEKDEW 413 eklpalp<-* + +++lp ek00381 414 TMVSPLP 420 PF01344.15.ls: domain 4 of 4, from 462 to 520: score 31.3, E = 3.1e-06 *->pRsgagvvvldgkiYviGGydg..............qslnsvevYDp Rs+a+++++++ki+ iGG ++++ + ++++ + s+ +ve+YD+ ek00381 462 SRSFASAAAFGDKIFYIGGLHIatnsgirlpsgtvdGSSVTVEIYDV 508 etntWtklpsmp<-* +n+W++ ++ p ek00381 509 NKNEWKMAANIP 520 PF07646.5.ls: domain 2 of 2, from 462 to 520: score 15.7, E = 0.16 *->pryphasvvpggklyvvGGs....fkgnrgtgngde.sssdllvldp +r+ +++ g+k++ +GG + ++ g r + + +++ss ++ ++d ek00381 462 SRSFASAAAFGDKIFYIGGLhiatNSGIRLPSGTVDgSSVTVEIYDV 508 etnvWeklpalp<-* ++n+W+ + +p ek00381 509 NKNEWKMAANIP 520 PF01344.15.fs: domain 4 of 4, from 462 to 520: score 29.3, E = 1.7e-07 *->pRsgagvvvldgkiYviGGydg..............qslnsvevYDp Rs+a+++++++ki+ iGG ++++ + ++++ + s+ +ve+YD+ ek00381 462 SRSFASAAAFGDKIFYIGGLHIatnsgirlpsgtvdGSSVTVEIYDV 508 etntWtklpsmp<-* +n+W++ ++ p ek00381 509 NKNEWKMAANIP 520 //