hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-01253879/chunk_1/iprscan-20080809-01253879.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ek00381
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00225                                                 108.8    6.2e-28   1
SM00612                                                  47.1    2.3e-09   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      35   132 ..     1   114 []   108.8  6.2e-28
SM00612      1/4     321   384 ..     1    55 []     5.0      5.8
SM00612      2/4     385   433 ..     1    55 []    29.7  0.00041
SM00612      3/4     434   473 ..     1    55 []     8.2      2.5
SM00612      4/4     474   536 ..     1    55 []     4.2      7.2

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 35 to 132: score 108.8, E = 6.2e-28
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +D++l+v+g         ++f++  Hk+vLa+c   S+yF+a+f s+
     ek00381    35    TDIVLIVEG---------TEFPC--HKMVLATC---SSYFRAMFMSg 67   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    +++++++++l        v++ ++++++ + Yt+ l ++++   +ve+l
     ek00381    68 lseskqthVHLRN------VDAATLQIIITYAYTgNLAMNDS---TVEQL 108  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                    e+A fl    q++++ + C e+l+k++   
     ek00381   109 YETACFL----QVEdVLQRCREYLIKKI    132  

SM00612: domain 1 of 4, from 321 to 384: score 5.0, E = 5.8
                   *->kiYvvGGfdgttrclp..gegqrlksvE.......vYDpetnkWrpv
                       iY++GG+ + +++ +++++++ l +++++ +   ++D   n+W p 
     ek00381   321    DIYIAGGQVPLKNTKTnhSKTSKLQTAFrtvncfyWFDAQQNTWFPK 367  

                   psMptpRsgagvaving<-*
                   ++M   R   +++ ++g   
     ek00381   368 TPMLFVRIKPSLVCCEG    384  

SM00612: domain 2 of 4, from 385 to 433: score 29.7, E = 0.00041
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iY++GG +       g+    ++vE+YD e ++W++v ++p++   
     ek00381   385    YIYAIGGDSV------GGELNRRTVERYDTEKDEWTMVSPLPCAWQW 425  

                   agvaving<-*
                   ++++v+++   
     ek00381   426 SAAVVVHD    433  

SM00612: domain 3 of 4, from 434 to 473: score 8.2, E = 2.5
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      +iYv               ++l+   +Y p+++ W +++  +t Rs 
     ek00381   434    CIYV---------------MTLNLMYCYFPRSDSWVEMAMRQTSRSF 465  

                   agvaving<-*
                   a++a++++   
     ek00381   466 ASAAAFGD    473  

SM00612: domain 4 of 4, from 474 to 536: score 4.2, E = 7.2
                   *->kiYvvGGfdgttr.clp.gegqrlks...vEvYDpetnkWrpvpsMp
                      ki+ +GG + +t+++++ ++g++  s+ +vE+YD   n+W++ ++ p
     ek00381   474    KIFYIGGLHIATNsGIRlPSGTVDGSsvtVEIYDVNKNEWKMAANIP 520  

                   tpRsg...agvaving<-*
                    +R+ ++ + ++vi +   
     ek00381   521 AKRYSdpcVRAVVISN    536  

//