hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-01313318/chunk_1/iprscan-20080809-01313318.nocrc
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Query sequence: ek00387
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03097.8.fs BRO1-like domain                               595.3   1.9e-180   1
PF03097.8.ls BRO1-like domain                               597.1   1.4e-176   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03097.8.fs   1/1      37   416 ..     1   446 []   595.3 1.9e-180
PF03097.8.ls   1/1      37   416 ..     1   446 []   597.1 1.4e-176

Alignments of top-scoring domains:
PF03097.8.fs: domain 1 of 1, from 37 to 416: score 595.3, E = 1.9e-180
                   *->pllalplKeTkevDlakpLkdyIkrtYgedpesq.kfeddklaeLdd
                       +++++lK+T+evDlakpL ++I++tY + +e+q +++++  +eL +
     ek00387    37    TFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQaQYCRA-AEELSK 82   

                   LRnnavlrtpdrseaglelLyrYYaQLeaLelRFPsdsdrqiknveFtWy
                   LR++av r +d++e  le L+rYY+Q++ +e++FP ++ +qi+ ++FtW+
     ek00387    83 LRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSE-NQIC-LTFTWK 130  

                   DafgygslFGtgkpvsqtsLaFEKasVLFNigALySqiAasqdRatdeGL
                   Daf++gslFG+++++++ sL +EK++VLFN++AL SqiAa+q+++ deGL
     ek00387   131 DAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGL 180  

                   KtAchyFQaAAGcFayLrEnflnappsspsvDlseetLgaLenLMLAQAQ
                   K A++++Q A+G+F +++E++l+a+ ++p+vD+s++t+g+L+ +MLAQAQ
     ek00387   181 KIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQ 230  

                   EcfweKaildgdaskkdslilLkaAKLAaQvselYeeAlraYkmmteapv
                   E+f++Ka++d+   +kd++i    AKLA+Q+++++++A ++      +++
     ek00387   231 EVFFLKATRDK---MKDAII----AKLANQAADYFGDAFKQ------CQY 267  

                   spyidkeWikhvqvKaahFaAlAhYrqalaleDekkkyGeeIarLqkAls
                   ++  +ke  +++++K++ ++A A Y+q++ ++ ++kk+GeeIarLq+A++
     ek00387   268 KDTLPKEVFPVLAAKHCIMQANAEYHQSILAK-QQKKFGEEIARLQHAAE 316  

                   QLYdmPEGlptiLkdeeRRllkeAlkkkkglpaeealrshplcshlrkiD
                                      l+k+  +++                      
     ek00387   317 -------------------LIKTVASRY---------------------- 325  

                   slqedLkglksvvkekLkraeKDNDfIYlqpVPsessLppikpasmVKpi
                     ++ +k + + +++ L+ a+KDNDfIY+++VP++++L+pi++a++VK++
     ek00387   326 DEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKST 375  

                   ppeevlkpqdeletdkpevgdLFkkLVPlaVhealsaYsErkdklvraev
                   p++++ ++ +          dLF k+VP++V ++l+aY++rk++lv++++
     ek00387   376 PVNVPISQKFT---------DLFEKMVPVSVQQSLAAYNQRKADLVNRSI 416  

                   <-*
                      
     ek00387     -     -    

PF03097.8.ls: domain 1 of 1, from 37 to 416: score 597.1, E = 1.4e-176
                   *->pllalplKeTkevDlakpLkdyIkrtYgedpesq.kfeddklaeLdd
                       +++++lK+T+evDlakpL ++I++tY + +e+q +++++  +eL +
     ek00387    37    TFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQaQYCRA-AEELSK 82   

                   LRnnavlrtpdrseaglelLyrYYaQLeaLelRFPsdsdrqiknveFtWy
                   LR++av r +d++e  le L+rYY+Q++ +e++FP ++ +qi+ ++FtW+
     ek00387    83 LRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSE-NQIC-LTFTWK 130  

                   DafgygslFGtgkpvsqtsLaFEKasVLFNigALySqiAasqdRatdeGL
                   Daf++gslFG+++++++ sL +EK++VLFN++AL SqiAa+q+++ deGL
     ek00387   131 DAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGL 180  

                   KtAchyFQaAAGcFayLrEnflnappsspsvDlseetLgaLenLMLAQAQ
                   K A++++Q A+G+F +++E++l+a+ ++p+vD+s++t+g+L+ +MLAQAQ
     ek00387   181 KIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQ 230  

                   EcfweKaildgdaskkdslilLkaAKLAaQvselYeeAlraYkmmteapv
                   E+f++Ka++d+   +kd++i    AKLA+Q+++++++A ++      +++
     ek00387   231 EVFFLKATRDK---MKDAII----AKLANQAADYFGDAFKQ------CQY 267  

                   spyidkeWikhvqvKaahFaAlAhYrqalaleDekkkyGeeIarLqkAls
                   ++  +ke  +++++K++ ++A A Y+q++ ++ ++kk+GeeIarLq+A++
     ek00387   268 KDTLPKEVFPVLAAKHCIMQANAEYHQSILAK-QQKKFGEEIARLQHAAE 316  

                   QLYdmPEGlptiLkdeeRRllkeAlkkkkglpaeealrshplcshlrkiD
                                      l+k+  +++                      
     ek00387   317 -------------------LIKTVASRY---------------------- 325  

                   slqedLkglksvvkekLkraeKDNDfIYlqpVPsessLppikpasmVKpi
                     ++ +k + + +++ L+ a+KDNDfIY+++VP++++L+pi++a++VK++
     ek00387   326 DEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDLDPIGKATLVKST 375  

                   ppeevlkpqdeletdkpevgdLFkkLVPlaVhealsaYsErkdklvraev
                   p++++ ++ +          dLF k+VP++V ++l+aY++rk++lv++++
     ek00387   376 PVNVPISQKFT---------DLFEKMVPVSVQQSLAAYNQRKADLVNRSI 416  

                   <-*
                      
     ek00387     -     -    

//