hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-01374283/chunk_1/iprscan-20080809-01374283.nocrc
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Query sequence: ff00542
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02187.8.fs Growth-Arrest-Specific Protein 2 Domain        163.3    3.1e-49   2
PF02187.8.ls Growth-Arrest-Specific Protein 2 Domain        161.4    2.2e-45   1
PF00307.21.fs Calponin homology (CH) domain                   32.4    4.8e-08   1
PF00307.21.ls Calponin homology (CH) domain                   34.3    3.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00307.21.fs   1/1     125   251 ..     1   122 []    32.4  4.8e-08
PF00307.21.ls   1/1     125   251 ..     1   122 []    34.3  3.8e-07
PF02187.8.fs   2/2     296   368 ..     1    75 []   159.4  4.7e-48
PF02187.8.ls   1/1     296   368 ..     1    75 []   161.4  2.2e-45

Alignments of top-scoring domains:
PF00307.21.fs: domain 1 of 1, from 125 to 251: score 32.4, E = 4.8e-08
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                       ++++l +W++++ + +++             nf + +  +Gl+Lc+
     ff00542   125    AMKEDLAEWLRDLYGLDID-----------AANFLQVLE-TGLVLCQ 159  

                   LlnklrPglidkkkv....................pslsrfdkleNlnla
                    +n++   ++ +    + + ++ + ++ + + ++  +   f++++N++++
     ff00542   160 HANVVTDAALAFLAEapaqaqkipmprvgvscngaAQPGTFQARDNVSNF 209  

                   ldaaekeGlgiilvlidpeDivegnpdPDeklvltllwqLirrfq<-*
                   +++++ke ++ ++ ++++eD+v +++    k v+ +l  L rr+    
     ff00542   210 IQWCRKEMGIQEVLMFETEDLVLRKN---VKNVVLCLLELGRRAW    251  

PF00307.21.ls: domain 1 of 1, from 125 to 251: score 34.3, E = 3.8e-07
                   *->sqekellrWvnsvlagypgnkdtlPippvritnfftdwlkDGlaLca
                       ++++l +W++++ + +++             nf + +  +Gl+Lc+
     ff00542   125    AMKEDLAEWLRDLYGLDID-----------AANFLQVLE-TGLVLCQ 159  

                   LlnklrPglidkkkv....................pslsrfdkleNlnla
                    +n++   ++ +    + + ++ + ++ + + ++  +   f++++N++++
     ff00542   160 HANVVTDAALAFLAEapaqaqkipmprvgvscngaAQPGTFQARDNVSNF 209  

                   ldaaekeGlgiilvlidpeDivegnpdPDeklvltllwqLirrfq<-*
                   +++++ke ++ ++ ++++eD+v +++    k v+ +l  L rr+    
     ff00542   210 IQWCRKEMGIQEVLMFETEDLVLRKN---VKNVVLCLLELGRRAW    251  

PF02187.8.fs: domain 2 of 2, from 296 to 368: score 159.4, E = 4.7e-48
                   *->dkldDeVkrivedPPCkCpdkFrveqvseGKYRfGDsqlLrlvrilr
                      ++ld  V+ +v    C+Cp +F + +vseGKYR+GDs  L++ rilr
     ff00542   296    RNLDQMVQSLVSH--CTCPVQFSMVKVSEGKYRVGDSNTLIFIRILR 340  

                   shVMVRVGGGWetLdeyLlKhDPCRasq<-*
                    hVMVRVGGGW+tL +yL+KhDPCR+ +   
     ff00542   341 NHVMVRVGGGWDTLGHYLDKHDPCRCTS    368  

PF02187.8.ls: domain 1 of 1, from 296 to 368: score 161.4, E = 2.2e-45
                   *->dkldDeVkrivedPPCkCpdkFrveqvseGKYRfGDsqlLrlvrilr
                      ++ld  V+ +v    C+Cp +F + +vseGKYR+GDs  L++ rilr
     ff00542   296    RNLDQMVQSLVSH--CTCPVQFSMVKVSEGKYRVGDSNTLIFIRILR 340  

                   shVMVRVGGGWetLdeyLlKhDPCRasq<-*
                    hVMVRVGGGW+tL +yL+KhDPCR+ +   
     ff00542   341 NHVMVRVGGGWDTLGHYLDKHDPCRCTS    368  

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