hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-01374283/chunk_1/iprscan-20080809-01374283.nocrc
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Query sequence: ff00542
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00243                                                 156.7    2.3e-42   1
SM00033                                                  67.4    1.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00033    1/1     126   246 ..     1   100 []    67.4  1.7e-15
SM00243    1/1     296   368 ..     1    76 []   156.7  2.3e-42

Alignments of top-scoring domains:
SM00033: domain 1 of 1, from 126 to 246: score 67.4, E = 1.7e-15
                   *->eeeallrWinsll....kvtnfssdlkDGvvLckLlnslsPagsvdk
                      ++e+l +W+++l + + +  nf + l +G+vLc+ +n++  a +   
     ff00542   126    MKEDLAEWLRDLYgldiDAANFLQVLETGLVLCQHANVVTDAALAFL 172  

                   kk........................rfkkleNinlalsfaeklgafLGv
                   +  + + ++ + ++ + + ++  +++ f++++N+ +++++++k+   +G+
     ff00542   173 AEapaqaqkipmprvgvscngaaqpgTFQARDNVSNFIQWCRKE---MGI 219  

                   gkvvlfdpeDlvegnenkklilgviwtLirl<-*
                    +v +f++eDlv     +k++++v+ +L  l   
     ff00542   220 QEVLMFETEDLVL----RKNVKNVVLCLLEL    246  

SM00243: domain 1 of 1, from 296 to 368: score 156.7, E = 2.3e-42
                   *->dkiddeVkrivetPPCkCptkFqvekiSegkYRqfGDsqiLrlVRiL
                      +++d  V+ +v    C+Cp +F + k+SegkYR +GDs  L++ RiL
     ff00542   296    RNLDQMVQSLVSH--CTCPVQFSMVKVSEGKYR-VGDSNTLIFIRIL 339  

                   RStVMVRVGGGWetLdeyLqKhDPCRakg<-*
                   R +VMVRVGGGW+tL +yL+KhDPCR+ +   
     ff00542   340 RNHVMVRVGGGWDTLGHYLDKHDPCRCTS    368  

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