hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-01580875/chunk_1/iprscan-20080809-01580875.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff01216 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07690.6.fs Major Facilitator Superfamily 53.9 5.3e-15 1 PF00083.14.fs Sugar (and other) transporter 39.1 5.9e-11 1 PF07690.6.ls Major Facilitator Superfamily 28.1 1.5e-05 1 PF00083.14.ls Sugar (and other) transporter -55.2 3.5e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00083.14.ls 1/1 4 408 .. 1 488 [] -55.2 3.5e-05 PF07690.6.ls 1/1 9 369 .. 1 397 [] 28.1 1.5e-05 PF07690.6.fs 1/1 49 369 .. 66 397 .] 53.9 5.3e-15 PF00083.14.fs 1/1 124 236 .. 163 285 .. 39.1 5.9e-11 Alignments of top-scoring domains: PF00083.14.ls: domain 1 of 1, from 4 to 408: score -55.2, E = 3.5e-05 *->valvaalgGsflfGYDtgvigafltlisflkrfglltssgadeelvg + + ++ ++ +lt l++++l + + ff01216 4 CPWQPVFWQ---------HCSHPLTGWI-LRKPHLVEPI-------- 32 ystvltglivsifsvGcliGslfaGwlgdrfGRkksllianvlfviGall ++ f++ ++ s f++ rfGRk+ l ++ + ++l ff01216 33 --------PAALFQLV-ICHSPFLP----RFGRKNVLFVTMGMQTGFSFL 69 mgaakgkttiGgksvymlivGRvivGlgvGgisvlvPmYisEiAPkklRG ++++k +++m+ v v+vG+g +v++ ++ Ei k+ R ff01216 70 QIFSK--------NFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVR- 110 alvslyQlaitfGilvAaiiglglnktnnssnnsdgWriplglqlvpall ++++ l++ + +++++ ++++ + Wr +l +p++l ff01216 111 --IIFSTLGVCIFYAFGYMVLPLFAYFIRD------WRMLLVALTMPGVL 152 lligllflPESPRwLvekgkleeArevLakllrgv.......sdvdqeiq + ++++f+PESPRwL+++g+ eeA+ +++k + ++ ++ + d+ ff01216 153 CVALWWFIPESPRWLISQGRFEEAEVIIRK-AAKAngivvpsTIFDPSEL 201 eekdeleasreeekagkaswlelfsrktrpkyrqrllmgvmlqifQQltG + + + ++ ++ +l l+++++ +r ++m++ml+++ ff01216 202 QDLSSKKQQ-------SHNILDLLRTWN---IRMVTIMSIMLWMTI---- 237 iNaifYYsptifeslGvsdstasllvtiivgvvNfvfTfialiflvdrfG ++ Y++ ++ + +d ++ ++ v + + + a + l ++ ff01216 238 --SVGYFGLSLDTPNLHGDI---FVNCFLSAMVEVPAYVLA-WLLLQYLP 281 RR....pllLlGaagmaicmvvlgasvivallglnkskdpsskaagivai RR + ++l lG+++ + + +v+ + l +l+++ + + ff01216 282 RRysmaTALFLGGSVLLFMQLVP-----PDLYYLATV----------LVM 316 vfillfiafFalgwGpvpwvivsElFPlgvRpkamaiataanwlanflig v+ + a+F+ +++v+ +El+P+ vR + +++ a+ l+++l + ff01216 317 VGKFGVTAAFS-----MVYVYTAELYPTVVRNMGVGVSSTASRLGSILSP 361 flfpiitgaiglflggyvflvfagllvlfiifvfffvPETkGrtL.eeie ++ +ga+ + ++ +g l + + + +f+PE G +L++ i+ ff01216 362 YF--VYLGAYD----RFLPYILMGSLTILTAILTLFLPESFGTPLpDTID 405 elf<-* +++ ff01216 406 QML 408 PF07690.6.ls: domain 1 of 1, from 9 to 369: score 28.1, E = 1.5e-05 *->lflaaflaglgrsllgpalpylassleesslgqtdllspteiglllt +f ++ l+ ++l p l e ff01216 9 VFWQHCSHPLTGWILR--KPHLV---EP------------------- 31 afalgyalaqpla..GrlsDrfGrrvyirlkpvlllglllfalgslllaf + +al+q+++ ++++ rfGr+ vl++ +++ + +s+l +f ff01216 32 ---IPAALFQLVIchSPFLPRFGRK---N---VLFVTMGMQTGFSFLQIF 72 asstslwllliarallqGlgagllapaaaaliadwfppeergralgiv.s + ++++++++ +l G+g+ + ++aa +l ++++ ++ r + ff01216 73 SK--NFEMFVVLFVL-VGMGQISNYVAAFVLGTEILGKSVRIIFSTLGvC 119 agfglGaalggpllggllaalgwwwssgtfWraaFlilgilallaallll ++++G + + pl+++++ + Wr + ++l ++l+++l ff01216 120 IFYAFGYM-VLPLFAYFIRD----------WRMLLVALTMPGVLCVAL-- 156 vlfllpeppakasgkpeeeeagi........................... ++++pe+p+ ++ eea ++ + ++ +++ ++++ ++ + ff01216 157 -WWFIPESPRWLISQGRFEEAEViirkaakangivvpstifdpselqdls 205 .alr.lll.p.lllillalflllaaflalltflplylllpllls.sagls +++++ + ++ll+ + ++++ ++++++++t + y++l l +++ g + ff01216 206 sKKQqSHNiLdLLRTWNIRMVTIMSIMLWMTISVGYFGLSLDTPnLHGDI 255 lsalaagllll....alglggllgglllggrlsdrlgrglarkgeaeaer ++ ++l + + +a+ l++ll+++l r ff01216 256 FV--NCFLSAMvevpAYVLAWLLLQYLP---------------------R 282 rrllllgllllalgllllafapslliallllalvllGlgfggvfpalnal r ++ +l+l + +ll++ ++p+ l++l+ +++++ +g+ ++f+ + + ff01216 283 RYSMATALFLGGSVLLFMQLVPPDLYYLATVLVMVGKFGVTAAFSMVYVY 332 asdlappeaqerGtasGlyntagslggalgpllgGllld<-* +++l+p r ++ G+ +ta lg++l+p+++ l + ff01216 333 TAELYPTV--VRNMGVGVSSTASRLGSILSPYFVYLGAY 369 PF07690.6.fs: domain 1 of 1, from 49 to 369: score 53.9, E = 5.3e-15 *->rfGrrvyirlkpvlllglllfalgslllafasstslwllliarallq rfGr+ vl++ +++ + +s+l +f+ ++++++++ +l ff01216 49 RFGRK---N---VLFVTMGMQTGFSFLQIFSK--NFEMFVVLFVL-V 86 Glgagllapaaaaliadwfppeergralgiv.sagfglGaalggpllggl G+g+ + ++aa +l ++++ ++ r + ++++G + + pl++++ ff01216 87 GMGQISNYVAAFVLGTEILGKSVRIIFSTLGvCIFYAFGYM-VLPLFAYF 135 laalgwwwssgtfWraaFlilgilallaallllvlfllpeppakasgkpe + + Wr + ++l ++l+++l ++++pe+p+ ++ ff01216 136 IRD----------WRMLLVALTMPGVLCVAL---WWFIPESPRWLISQGR 172 eeeagi............................alr.lll.p.lllill eea ++ + ++ +++ ++++ ++ ++++++ + ++ll+ + ff01216 173 FEEAEViirkaakangivvpstifdpselqdlssKKQqSHNiLdLLRTWN 222 alflllaaflalltflplylllpllls.saglslsalaagllll....al ++++ ++++++++t + y++l l +++ g +++ ++l + + +a+ ff01216 223 IRMVTIMSIMLWMTISVGYFGLSLDTPnLHGDIFV--NCFLSAMvevpAY 270 glggllgglllggrlsdrlgrglarkgeaeaerrrllllgllllalglll l++ll+++l rr ++ +l+l + +ll+ ff01216 271 VLAWLLLQYLP---------------------RRYSMATALFLGGSVLLF 299 lafapslliallllalvllGlgfggvfpalnalasdlappeaqerGtasG + ++p+ l++l+ +++++ +g+ ++f+ + ++++l+p r ++ G ff01216 300 MQLVPPDLYYLATVLVMVGKFGVTAAFSMVYVYTAELYPTV--VRNMGVG 347 lyntagslggalgpllgGllld<-* + +ta lg++l+p+++ l + ff01216 348 VSSTASRLGSILSPYFVYLGAY 369 PF00083.14.fs: domain 1 of 1, from 124 to 236: score 39.1, E = 5.9e-11 *->vAaiiglglnktnnssnnsdgWriplglqlvpalllligllflPESP +++++ ++++ + Wr +l +p++l+ ++++f+PESP ff01216 124 FGYMVLPLFAYFIRD------WRMLLVALTMPGVLCVALWWFIPESP 164 RwLvekgkleeArevLakllrgv.......sdvdqeiqeekdeleasree RwL+++g+ eeA+ +++k + ++ ++ + d+ + + + ++ ff01216 165 RWLISQGRFEEAEVIIRK-AAKAngivvpsTIFDPSELQDLSSKKQQ--- 210 ekagkaswlelfsrktrpkyrqrllmgvmlqif<-* ++ +l l+++++ +r ++m++ml+++ ff01216 211 ----SHNILDLLRTWN---IRMVTIMSIMLWMT 236 //