hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-02042865/chunk_1/iprscan-20080809-02042865.nocrc
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Query sequence: ff01534
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00505.9.fs HMG (high mobility group) box                   77.4    3.8e-21   1
PF00505.9.ls HMG (high mobility group) box                   79.4      1e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00505.9.fs   1/1     279   347 ..     1    69 []    77.4  3.8e-21
PF00505.9.ls   1/1     279   347 ..     1    69 []    79.4    1e-20

Alignments of top-scoring domains:
PF00505.9.fs: domain 1 of 1, from 279 to 347: score 77.4, E = 3.8e-21
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      P +P+sA+ lf+++  a ik +nP+++ +e+sk+++ +W +L ee K
     ff01534   279    PQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 325  

                   apYeakAekeKarYekempeYk<-*
                   + Y +k e++K++Y+k++++Y+   
     ff01534   326 QVYKRKTEAAKKEYLKALAAYR    347  

PF00505.9.ls: domain 1 of 1, from 279 to 347: score 79.4, E = 1e-20
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      P +P+sA+ lf+++  a ik +nP+++ +e+sk+++ +W +L ee K
     ff01534   279    PQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 325  

                   apYeakAekeKarYekempeYk<-*
                   + Y +k e++K++Y+k++++Y+   
     ff01534   326 QVYKRKTEAAKKEYLKALAAYR    347  

//