hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-02121428/chunk_1/iprscan-20080809-02121428.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff01553y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 1370.8 0 1 PF00063.11.fs Myosin head (motor domain) 1368.9 0 1 PF01843.9.ls DIL domain 200.7 3.2e-57 1 PF01843.9.fs DIL domain 198.7 1.2e-56 1 PF00612.17.ls IQ calmodulin-binding motif 173.1 6.3e-49 6 PF00612.17.fs IQ calmodulin-binding motif 161.2 3.9e-47 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.fs 1/1 72 752 .. 1 791 [] 1368.9 0 PF00063.11.ls 1/1 72 752 .. 1 791 [] 1370.8 0 PF00612.17.fs 1/6 768 788 .. 1 21 [] 25.4 1.6e-06 PF00612.17.ls 1/6 768 788 .. 1 21 [] 27.4 4.6e-05 PF00612.17.fs 2/6 791 811 .. 1 21 [] 24.7 2.6e-06 PF00612.17.ls 2/6 791 811 .. 1 21 [] 26.7 7.4e-05 PF00612.17.ls 3/6 816 836 .. 1 21 [] 35.2 2.1e-07 PF00612.17.fs 3/6 816 836 .. 1 21 [] 33.2 7.9e-09 PF00612.17.fs 4/6 839 859 .. 1 21 [] 28.5 2e-07 PF00612.17.ls 4/6 839 859 .. 1 21 [] 30.5 5.4e-06 PF00612.17.fs 5/6 864 884 .. 1 21 [] 29.8 8.1e-08 PF00612.17.ls 5/6 864 884 .. 1 21 [] 31.8 2.2e-06 PF00612.17.ls 6/6 887 907 .. 1 21 [] 21.5 0.0028 PF00612.17.fs 6/6 887 907 .. 1 21 [] 19.5 9.8e-05 PF01843.9.fs 1/1 1661 1766 .. 1 113 [] 198.7 1.2e-56 PF01843.9.ls 1/1 1661 1766 .. 1 113 [] 200.7 3.2e-57 Alignments of top-scoring domains: PF00063.11.fs: domain 1 of 1, from 72 to 752: score 1368.9, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl++L+yl+Ep+vLhNL++R+ +++lIYTY+G+vLv++NPY++Lp ff01553y2 72 ENDLTALSYLHEPAVLHNLRVRFIDSKLIYTYCGIVLVAINPYEQLP 118 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY+e+ii+aY+G+++g+++PHiFA+A+eAY++M +d +NQsI++sGESGA ff01553y2 119 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGA 168 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT+++K+ m+Y+A vsgs++ e+++e+++l+sNPi+E+ ff01553y2 169 GKTVSAKYAMRYFATVSGSAS------------EANVEEKVLASNPIMES 206 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy GNAKTtRN+NSSRFGK+ieI Fd+ ++i +G++++tYLLEKSRVv+ ff01553y2 207 IGNAKTTRNDNSSRFGKYIEIGFDKRYRI----IGANMRTYLLEKSRVVF 252 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+e+ERN+HIFYQL+a+a +e k+L+L+ ++++++Y++q+g + ff01553y2 253 QAEEERNYHIFYQLCASAKLPE-FKMLRLG---NADNFNYTKQGG----S 294 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk + + g+DDa+e+ +tr+A++++G++++ q++ifrilA+ILhLGN+ F ff01553y2 295 PVI-EGVDDAKEMAHTRQACTLLGISESHQMGIFRILAGILHLGNVG-FT 342 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG +++ ++ + +++++e l i++ L+GvD+ee+ ++L++r++ t+ ff01553y2 343 SRD----ADSCT---IPPKHEP-LCIFCDLMGVDYEEMCHWLCHRKLATA 384 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ +et+ kp+++ qA++aRDALAK+iY +LF+WiV+++N+aL++ ff01553y2 385 -----TETYIKPISKLQATNARDALAKHIYAKLFNWIVDNVNQALHSAV- 428 asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN k++sfIGvLDIyGFE F e+N ff01553y2 429 -----------------------------KQHSFIGVLDIYGFETF-EIN 448 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci SFEQ+cINY+NEKLQQ+FN+h+FklEQEEY++E+I+Wt Id+ +Dnq+ci ff01553y2 449 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF-YDNQPCI 497 dLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAqk +LIE+K +GIl lLDEeC++Pk+tD+t+++KL++t+++k++ +F +k ff01553y2 498 NLIESK--LGILDLLDEECKMPKGTDDTWAQKLYNTHLNKCA---LF-EK 541 pgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllks p r ++++Fii H+A +VeY++egfleKNkD++f++ i++lks ff01553y2 542 P-R-------LSNKAFIIQHFADKVEYQCEGFLEKNKDTVFEEQIKVLKS 583 SsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgsgkg S+ + l+eLF+++e+ +++p++++ + + + ++++ak+ +g++ ff01553y2 584 SKF-KMLPELFQDDEK-------AISPTSATSSGRTPLTRTPAKPTKGRP 625 ksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkag ++ k+++ +Tvg+qf++sl+ Lm+tL++t +PH+vRCIKPN+ K + ff01553y2 626 GQMAKEHK-KTVGHQFRNSLHLLMETLNAT---TPHYVRCIKPNDFKFPF 671 qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwp +FD++++ +Qlr++GvLE +iRi+ aGFP+R+t++eF++RYr+L++++ + ff01553y2 672 TFDEKRAVQQLRACGVLE-TIRISAAGFPSRWTYQEFFSRYRVLMKQKDV 720 sgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* + d k+ c+++L++l +lDk++y+fGkTKiFfR ff01553y2 721 LS-------DRKQTCKNVLEKL-----ILDKDKYQFGKTKIFFR 752 PF00063.11.ls: domain 1 of 1, from 72 to 752: score 1370.8, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl++L+yl+Ep+vLhNL++R+ +++lIYTY+G+vLv++NPY++Lp ff01553y2 72 ENDLTALSYLHEPAVLHNLRVRFIDSKLIYTYCGIVLVAINPYEQLP 118 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY+e+ii+aY+G+++g+++PHiFA+A+eAY++M +d +NQsI++sGESGA ff01553y2 119 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGA 168 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT+++K+ m+Y+A vsgs++ e+++e+++l+sNPi+E+ ff01553y2 169 GKTVSAKYAMRYFATVSGSAS------------EANVEEKVLASNPIMES 206 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy GNAKTtRN+NSSRFGK+ieI Fd+ ++i +G++++tYLLEKSRVv+ ff01553y2 207 IGNAKTTRNDNSSRFGKYIEIGFDKRYRI----IGANMRTYLLEKSRVVF 252 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+e+ERN+HIFYQL+a+a +e k+L+L+ ++++++Y++q+g + ff01553y2 253 QAEEERNYHIFYQLCASAKLPE-FKMLRLG---NADNFNYTKQGG----S 294 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk + + g+DDa+e+ +tr+A++++G++++ q++ifrilA+ILhLGN+ F ff01553y2 295 PVI-EGVDDAKEMAHTRQACTLLGISESHQMGIFRILAGILHLGNVG-FT 342 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG +++ ++ + +++++e l i++ L+GvD+ee+ ++L++r++ t+ ff01553y2 343 SRD----ADSCT---IPPKHEP-LCIFCDLMGVDYEEMCHWLCHRKLATA 384 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ +et+ kp+++ qA++aRDALAK+iY +LF+WiV+++N+aL++ ff01553y2 385 -----TETYIKPISKLQATNARDALAKHIYAKLFNWIVDNVNQALHSAV- 428 asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN k++sfIGvLDIyGFE F e+N ff01553y2 429 -----------------------------KQHSFIGVLDIYGFETF-EIN 448 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci SFEQ+cINY+NEKLQQ+FN+h+FklEQEEY++E+I+Wt Id+ +Dnq+ci ff01553y2 449 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF-YDNQPCI 497 dLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAqk +LIE+K +GIl lLDEeC++Pk+tD+t+++KL++t+++k++ +F +k ff01553y2 498 NLIESK--LGILDLLDEECKMPKGTDDTWAQKLYNTHLNKCA---LF-EK 541 pgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllks p r ++++Fii H+A +VeY++egfleKNkD++f++ i++lks ff01553y2 542 P-R-------LSNKAFIIQHFADKVEYQCEGFLEKNKDTVFEEQIKVLKS 583 SsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgsgkg S+ + l+eLF+++e+ +++p++++ + + + ++++ak+ +g++ ff01553y2 584 SKF-KMLPELFQDDEK-------AISPTSATSSGRTPLTRTPAKPTKGRP 625 ksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkag ++ k+++ +Tvg+qf++sl+ Lm+tL++t +PH+vRCIKPN+ K + ff01553y2 626 GQMAKEHK-KTVGHQFRNSLHLLMETLNAT---TPHYVRCIKPNDFKFPF 671 qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwp +FD++++ +Qlr++GvLE +iRi+ aGFP+R+t++eF++RYr+L++++ + ff01553y2 672 TFDEKRAVQQLRACGVLE-TIRISAAGFPSRWTYQEFFSRYRVLMKQKDV 720 sgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* + d k+ c+++L++l +lDk++y+fGkTKiFfR ff01553y2 721 LS-------DRKQTCKNVLEKL-----ILDKDKYQFGKTKIFFR 752 PF00612.17.fs: domain 1 of 6, from 768 to 788: score 25.4, E = 1.6e-06 *->rraaikIQaawRGylaRkryk<-* r+a i+IQ+ +RG+l Rk+y ff01553y2 768 RAACIRIQKTIRGWLLRKKYL 788 PF00612.17.ls: domain 1 of 6, from 768 to 788: score 27.4, E = 4.6e-05 *->rraaikIQaawRGylaRkryk<-* r+a i+IQ+ +RG+l Rk+y ff01553y2 768 RAACIRIQKTIRGWLLRKKYL 788 PF00612.17.fs: domain 2 of 6, from 791 to 811: score 24.7, E = 2.6e-06 *->rraaikIQaawRGylaRkryk<-* r+aai++Q+++RGy+aR + k ff01553y2 791 RKAAITMQRYVRGYQARCYAK 811 PF00612.17.ls: domain 2 of 6, from 791 to 811: score 26.7, E = 7.4e-05 *->rraaikIQaawRGylaRkryk<-* r+aai++Q+++RGy+aR + k ff01553y2 791 RKAAITMQRYVRGYQARCYAK 811 PF00612.17.ls: domain 3 of 6, from 816 to 836: score 35.2, E = 2.1e-07 *->rraaikIQaawRGylaRkryk<-* ++aa++IQ++wR+y++R+ryk ff01553y2 816 TKAATIIQKYWRMYVVRRRYK 836 PF00612.17.fs: domain 3 of 6, from 816 to 836: score 33.2, E = 7.9e-09 *->rraaikIQaawRGylaRkryk<-* ++aa++IQ++wR+y++R+ryk ff01553y2 816 TKAATIIQKYWRMYVVRRRYK 836 PF00612.17.fs: domain 4 of 6, from 839 to 859: score 28.5, E = 2e-07 *->rraaikIQaawRGylaRkryk<-* r+a i++Q++ RG+laR ry+ ff01553y2 839 RAATIVLQSYLRGFLARNRYR 859 PF00612.17.ls: domain 4 of 6, from 839 to 859: score 30.5, E = 5.4e-06 *->rraaikIQaawRGylaRkryk<-* r+a i++Q++ RG+laR ry+ ff01553y2 839 RAATIVLQSYLRGFLARNRYR 859 PF00612.17.fs: domain 5 of 6, from 864 to 884: score 29.8, E = 8.1e-08 *->rraaikIQaawRGylaRkryk<-* ++ a++IQ+++RG+laR +yk ff01553y2 864 EHKAVIIQKRVRGWLARTHYK 884 PF00612.17.ls: domain 5 of 6, from 864 to 884: score 31.8, E = 2.2e-06 *->rraaikIQaawRGylaRkryk<-* ++ a++IQ+++RG+laR +yk ff01553y2 864 EHKAVIIQKRVRGWLARTHYK 884 PF00612.17.ls: domain 6 of 6, from 887 to 907: score 21.5, E = 0.0028 *->rraaikIQaawRGylaRkryk<-* +a+i +Q+++R+++a++++k ff01553y2 887 MHAIIYLQCCFRRMMAKRELK 907 PF00612.17.fs: domain 6 of 6, from 887 to 907: score 19.5, E = 9.8e-05 *->rraaikIQaawRGylaRkryk<-* +a+i +Q+++R+++a++++k ff01553y2 887 MHAIIYLQCCFRRMMAKRELK 907 PF01843.9.fs: domain 1 of 1, from 1661 to 1766: score 198.7, E = 1.2e-56 *->qlfkQlFsfiNaqlfNsLllrrdaacCswsrGmqirynlsqLeeWcr q++kQ+F+ i+a+++N+Lllr+d +Csws+Gmqiryn+sqLeeW+r ff01553y2 1661 QVVKQMFYIIGAITLNNLLLRKD--MCSWSKGMQIRYNVSQLEEWLR 1705 eagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLnp +++l+++g a+++Lepl+Qa+qLLqvkkkt++d+ e+ic++C aL++ ff01553y2 1706 DKNLMNSG--AKETLEPLIQAAQLLQVKKKTDDDA---EAICSMCNALTT 1750 aQlykiLtlYkpddye<-* aQ++k+L+lY+p +++ ff01553y2 1751 AQIVKVLNLYTPVNEF 1766 PF01843.9.ls: domain 1 of 1, from 1661 to 1766: score 200.7, E = 3.2e-57 *->qlfkQlFsfiNaqlfNsLllrrdaacCswsrGmqirynlsqLeeWcr q++kQ+F+ i+a+++N+Lllr+d +Csws+Gmqiryn+sqLeeW+r ff01553y2 1661 QVVKQMFYIIGAITLNNLLLRKD--MCSWSKGMQIRYNVSQLEEWLR 1705 eagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLnp +++l+++g a+++Lepl+Qa+qLLqvkkkt++d+ e+ic++C aL++ ff01553y2 1706 DKNLMNSG--AKETLEPLIQAAQLLQVKKKTDDDA---EAICSMCNALTT 1750 aQlykiLtlYkpddye<-* aQ++k+L+lY+p +++ ff01553y2 1751 AQIVKVLNLYTPVNEF 1766 //