hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-02121428/chunk_1/iprscan-20080809-02121428.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff01553y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 1330.9 0 1 SM00015 164.3 1.2e-44 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00242 1/1 64 765 .. 1 771 [] 1330.9 0 SM00015 1/6 766 788 .. 1 23 [] 30.0 0.00034 SM00015 2/6 789 811 .. 1 23 [] 27.8 0.0015 SM00015 3/6 814 836 .. 1 23 [] 36.9 2.7e-06 SM00015 4/6 837 859 .. 1 23 [] 27.3 0.0022 SM00015 5/6 862 884 .. 1 23 [] 31.0 0.00016 SM00015 6/6 885 907 .. 1 23 [] 11.4 19 Alignments of top-scoring domains: SM00242: domain 1 of 1, from 64 to 765: score 1330.9, E = 0 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdl.IYTYiGlvLva rnp++++g +D++ L+yL+EpavlhNL++R+ + IYTY+G+vLva ff01553y2 64 RNPDILVGENDLTALSYLHEPAVLHNLRVRFIDSKlIYTYCGIVLVA 110 vNPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlr +NPY ql piY++++i++Y+ G+++g++ PH+FA+A+eAY++M r ff01553y2 111 INPYEQL-PIYGEDIINAYS------GQNMGDMDPHIFAVAEEAYKQMAR 153 ekeNQsIiISGESGAGKTEatKkimqYLAavsg..svesvedqiLesNPi + +NQsIi+SGESGAGKT+++K++m+Y+A vsg+ s ve+++L+sNPi ff01553y2 154 DERNQSIIVSGESGAGKTVSAKYAMRYFATVSGsaSEANVEEKVLASNPI 203 LEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQ +E+ GNAKT+RN+NSSRFGK+ieI Fd+ i+GA++++YLLEKSRVV+Q ff01553y2 204 MESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQ 253 akgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfank a+ ERNYHIFYQL+a a ++ k l+L+ ++++++Y++qgg ff01553y2 254 AEEERNYHIFYQLCASAKLPEFKMLRLG----NADNFNYTKQGG------ 293 ryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAIL + ++g+DDa+e ++ t++A + lG+se++q+ IFrilA+IL ff01553y2 294 -----SPVIEGVDDAKEMAH----TRQACTLLGISESHQMGIFRILAGIL 334 HLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtk HLGN+ F++++ ++++ + ++ +e l + + L+gvd ee+ ++L++ ff01553y2 335 HLGNVGFTSRD---ADSCTI---PPKHEPLCIFCDLMGVDYEEMCHWLCH 378 RkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl. Rk+ t +e +++kp ++ qA++aRDALAK+iY++LF+W+V+++N++l+ ff01553y2 379 RKLATATE---TYIKPISKLQATNARDALAKHIYAKLFNWIVDNVNQALh 425 ....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQ + ++ +fIGVLDIyGFE Fe NSFEQfCINyaNEKLQQ+Fn hvFKlEQ ff01553y2 426 savkQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQ 475 EEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAq EEY++E+I+Wt IdF+ DNQpci+LIE K lGIl+lLDEeC++ ff01553y2 476 EEYMKEQIPWTLIDFY--DNQPCINLIESK----LGILDLLDEECKM--- 516 PkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFii PkgTD+t+++KL y++h++k f+kp r ++ aFii ff01553y2 517 PKGTDDTWAQKL----YNTHLNKCALFEKP-----------RLSNKAFII 551 kHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqss +H+A +V+Y++eGFLeKNkDt+fe+ i +l+sSk++ + +LF++++ + s ff01553y2 552 QHFADKVEYQCEGFLEKNKDTVFEEQIKVLKSSKFKMLPELFQDDEKAIS 601 saakekssggagksrkagr.r.eps.kgt.i.sskkrppTvGsqFk.sLn ++ +s+ r++ ++ ++ +kg + ++ k +++TvG qF++sL ff01553y2 602 PTSATSSG------RTPLTrTpAKPtKGRpGqMAKEHKKTVGHQFRnSLH 645 eLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRr LmetLn+t+PH++RCIKPN+ K p++Fd+++ +QLr++GvLE+iRI+ ff01553y2 646 LLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISA 695 aGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqsl aGFP+R++++eF+ RY+vL++++ +d k+ c+++L++l ff01553y2 696 AGFPSRWTYQEFFSRYRVLMKQKDVL----------SDRKQTCKNVLEKL 735 glgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* + ld+++yq+GkTK+F+R +gq+a+LE+lR ff01553y2 736 I-------LDKDKYQFGKTKIFFR-AGQVAYLEKLRAD 765 SM00015: domain 1 of 6, from 766 to 788: score 30.0, E = 0.00034 *->rleraAiiIQaawRGylaRkryk<-* +l++a i+IQ+++RG+l Rk+y ff01553y2 766 KLRAACIRIQKTIRGWLLRKKYL 788 SM00015: domain 2 of 6, from 789 to 811: score 27.8, E = 0.0015 *->rleraAiiIQaawRGylaRkryk<-* r+++aAi +Q+++RGy+aR+ k ff01553y2 789 RMRKAAITMQRYVRGYQARCYAK 811 SM00015: domain 3 of 6, from 814 to 836: score 36.9, E = 2.7e-06 *->rleraAiiIQaawRGylaRkryk<-* r+++aA+iIQ++wR+y++R+ryk ff01553y2 814 RRTKAATIIQKYWRMYVVRRRYK 836 SM00015: domain 4 of 6, from 837 to 859: score 27.3, E = 0.0022 *->rleraAiiIQaawRGylaRkryk<-* +++a i++Q++ RG+laR ry+ ff01553y2 837 IRRAATIVLQSYLRGFLARNRYR 859 SM00015: domain 5 of 6, from 862 to 884: score 31.0, E = 0.00016 *->rleraAiiIQaawRGylaRkryk<-* +e+ A+iIQ+++RG+laR +yk ff01553y2 862 LREHKAVIIQKRVRGWLARTHYK 884 SM00015: domain 6 of 6, from 885 to 907: score 11.4, E = 19 *->rleraAiiIQaawRGylaRkryk<-* r +a+i +Q ++R+ +a ++ k ff01553y2 885 RSMHAIIYLQCCFRRMMAKRELK 907 //