hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-02194521/chunk_1/iprscan-20080809-02194521.nocrc
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Query sequence: ff01868
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00018.18.fs SH3 domain                                   57.7    5.2e-15   1
PF00018.18.ls SH3 domain                                   59.7    9.2e-15   1
PF07653.7.fs Variant SH3 domain                           23.1    5.3e-06   1
PF00241.10.fs Cofilin/tropomyosin-type actin-binding pr    22.7    5.5e-06   1
PF07653.7.ls Variant SH3 domain                           24.9    0.00027   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00241.10.fs   1/1      21    61 ..   102   146 .]    22.7  5.5e-06
PF00018.18.ls   1/1     302   357 ..     1    59 []    59.7  9.2e-15
PF00018.18.fs   1/1     302   357 ..     1    59 []    57.7  5.2e-15
PF07653.7.ls   1/1     303   357 ..     1    69 []    24.9  0.00027
PF07653.7.fs   1/1     303   357 ..     1    69 []    23.1  5.3e-06

Alignments of top-scoring domains:
PF00241.10.fs: domain 1 of 1, from 21 to 61: score 22.7, E = 5.5e-06
                   *->sKMlYASskdalkkalgGdqiqvevqatIgDasdlseealkeklk<-
                      +K ++AS++ + +++l+G   +v+++a+   ++d+ +e+++ek+   
     ff01868    21    RKGACASHVSTMASFLKG--AHVTINAR--AEEDVEPECIMEKVA   61   

                   *
                    
     ff01868     -   -    

PF00018.18.ls: domain 1 of 1, from 302 to 357: score 59.7, E = 9.2e-15
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                        ++ALYDY+a ++ E+sF +   it +e  d+ gWW+g   +  G+
     ff01868   302    LCARALYDYQAADDTEISFDPENLITGIEVIDE-GWWRGYGPD--GH 345  

                   eGliPsNYVepv<-*
                   +G++P+NYVe++   
     ff01868   346 FGMFPANYVELI    357  

PF00018.18.fs: domain 1 of 1, from 302 to 357: score 57.7, E = 5.2e-15
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                        ++ALYDY+a ++ E+sF +   it +e  d+ gWW+g   +  G+
     ff01868   302    LCARALYDYQAADDTEISFDPENLITGIEVIDE-GWWRGYGPD--GH 345  

                   eGliPsNYVepv<-*
                   +G++P+NYVe++   
     ff01868   346 FGMFPANYVELI    357  

PF07653.7.ls: domain 1 of 1, from 303 to 357: score 24.9, E = 0.00027
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                       +ra+ dy a +d +e      +s+    ++  i    +  d+gww+
     ff01868   303    CARALYDYQA-ADDTE------ISFDPENLITGI----EVIDEGWWR 338  

                   geslggGrrrRGlvPssaveel<-*
                   g+   +G+   G +P+++ve +   
     ff01868   339 GYG-PDGHF--GMFPANYVELI    357  

PF07653.7.fs: domain 1 of 1, from 303 to 357: score 23.1, E = 5.3e-06
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                       +ra+ dy a +d +e      +s+    ++  i    +  d+gww+
     ff01868   303    CARALYDYQA-ADDTE------ISFDPENLITGI----EVIDEGWWR 338  

                   geslggGrrrRGlvPssaveel<-*
                   g+   +G+   G +P+++ve +   
     ff01868   339 GYG-PDGHF--GMFPANYVELI    357  

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