hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-02263089/chunk_1/iprscan-20080809-02263089.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff02151 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02210.14.ls Laminin G domain 425.3 7.9e-125 4 PF02210.14.fs Laminin G domain 417.9 1.3e-122 4 PF00054.13.fs Laminin G domain 173.5 1.9e-49 4 PF00054.13.ls Laminin G domain 171.4 2.1e-48 4 PF00754.15.ls F5/8 type C domain 130.0 6.1e-36 1 PF00754.15.fs F5/8 type C domain 128.2 7e-36 1 PF00008.17.fs EGF-like domain 56.2 7.3e-15 2 PF00008.17.ls EGF-like domain 59.9 7.5e-15 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00754.15.fs 1/1 86 215 .. 1 163 [] 128.2 7e-36 PF00754.15.ls 1/1 86 215 .. 1 163 [] 130.0 6.1e-36 PF00054.13.ls 1/4 253 385 .. 1 159 [] 53.8 5.4e-13 PF00054.13.fs 1/4 253 385 .. 1 159 [] 52.0 1.5e-14 PF02210.14.fs 1/4 253 382 .. 1 141 [] 119.5 1.6e-34 PF02210.14.ls 1/4 253 382 .. 1 141 [] 121.3 2.5e-33 PF00054.13.fs 2/4 440 569 .. 1 159 [] 48.5 1.5e-13 PF02210.14.fs 2/4 440 566 .. 1 141 [] 106.7 8.6e-31 PF02210.14.ls 2/4 440 566 .. 1 141 [] 108.6 1.7e-29 PF00054.13.ls 2/4 440 569 .. 1 159 [] 50.3 5.9e-12 PF00008.17.ls 1/2 595 627 .. 1 38 [] 34.7 2.9e-07 PF00008.17.fs 1/2 595 627 .. 1 38 [] 32.9 2.6e-08 PF00054.13.fs 3/4 864 986 .. 1 159 [] 62.3 1.6e-17 PF02210.14.fs 3/4 864 983 .. 1 141 [] 111.9 2.6e-32 PF02210.14.ls 3/4 864 983 .. 1 141 [] 113.7 4.9e-31 PF00054.13.ls 3/4 864 986 .. 1 159 [] 64.1 4.3e-16 PF00008.17.fs 2/2 1005 1039 .. 1 38 [] 23.3 1.2e-05 PF00008.17.ls 2/2 1005 1039 .. 1 38 [] 25.2 0.00021 PF02210.14.fs 4/4 1089 1218 .. 1 141 [] 79.8 6.3e-23 PF02210.14.ls 4/4 1089 1218 .. 1 141 [] 81.7 2.2e-21 Alignments of top-scoring domains: PF00754.15.fs: domain 1 of 1, from 86 to 215: score 128.2, E = 7e-36 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Ss +g+++ +a+L++ + ++Ws+ ff02151 86 AFSSSSDLTGTHS--PAQLNWRVGT----------------GGWSP- 113 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd ++ ++a+qwlq DLg ++it+v tqgr+++ + +v+sY+++ Sd ff02151 114 AD------SNAQQWLQMDLGNRVEITAVATQGRYGSSD-WVTSYSLMFSD 156 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW+++k+ ++ ++F gn ++d++v++ + +++ AR+ ff02151 157 TG-R--NWKQYKQ--------EDsIWTFaGNmNADsVVHHKLLHSVRARF 195 vRivptswnggggiasraEl<-* vR+vp++wn++g+i++r+E+ ff02151 196 VRFVPLEWNPSGKIGMRVEV 215 PF00754.15.ls: domain 1 of 1, from 86 to 215: score 130.0, E = 6.1e-36 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse + ++Ss +g+++ +a+L++ + ++Ws+ ff02151 86 AFSSSSDLTGTHS--PAQLNWRVGT----------------GGWSP- 113 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggngyvksYkiqySd ++ ++a+qwlq DLg ++it+v tqgr+++ + +v+sY+++ Sd ff02151 114 AD------SNAQQWLQMDLGNRVEITAVATQGRYGSSD-WVTSYSLMFSD 156 DGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppikARY G + nW+++k+ ++ ++F gn ++d++v++ + +++ AR+ ff02151 157 TG-R--NWKQYKQ--------EDsIWTFaGNmNADsVVHHKLLHSVRARF 195 vRivptswnggggiasraEl<-* vR+vp++wn++g+i++r+E+ ff02151 196 VRFVPLEWNPSGKIGMRVEV 215 PF00054.13.ls: domain 1 of 4, from 253 to 385: score 53.8, E = 5.4e-13 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+ + +G+L+ G+ ++ D + leL++Grl ++++l ff02151 253 FKSMQGDGVLF---HGEGQRG--------DHITLELQKGRLALHLNL 288 Gsgrlrpavvrs.......gdkvlnDGkWHsvelerngrsgtLsVdgear G+ +a + s+ ++ + g l+D +WHsv +er+g++++ Vd+ ff02151 289 GDS---KARLSSslpsatlGSL-LDDQHWHSVLIERVGKQVNFTVDKHTQ 334 skktLgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlai + ++++ ++ Ld d+ L +GG+P v+ ++++ ff02151 335 ----------HFRTKGETDA----LDIDYELSFGGIP-----VPGKPGTF 365 sps.fkGCirdviingkpld<-* ++++f+GCi +++ ng+++ ff02151 366 LKKnFHGCIENLYYNGVNII 385 PF00054.13.fs: domain 1 of 4, from 253 to 385: score 52.0, E = 1.5e-14 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl F+ + +G+L+ G+ ++ D + leL++Grl ++++l ff02151 253 FKSMQGDGVLF---HGEGQRG--------DHITLELQKGRLALHLNL 288 Gsgrlrpavvrs.......gdkvlnDGkWHsvelerngrsgtLsVdgear G+ +a + s+ ++ + g l+D +WHsv +er+g++++ Vd+ ff02151 289 GDS---KARLSSslpsatlGSL-LDDQHWHSVLIERVGKQVNFTVDKHTQ 334 skktLgGsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlai + ++++ ++ Ld d+ L +GG+P v+ ++++ ff02151 335 ----------HFRTKGETDA----LDIDYELSFGGIP-----VPGKPGTF 365 sps.fkGCirdviingkpld<-* ++++f+GCi +++ ng+++ ff02151 366 LKKnFHGCIENLYYNGVNII 385 PF02210.14.fs: domain 1 of 4, from 253 to 382: score 119.5, E = 1.6e-34 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+ q +G+L++ +g++g d +++LeL+ Grl l+++l ff02151 253 FKS-MQGDGVLFHGEGQrG---------D-HITLELQKGRLALHLNL 288 G......sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g. G+++ + s+ + t g+ l+D +WH+V +er g++v ++VD+++++ ++ ff02151 289 GdskarlSSSlPSATLGsLLDDQHWHSVLIERVGKQVNFTVDKHtQHfRt 338 spgssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCir ++ + l+++++l +GG+p +k+ + ++F+GCi+ ff02151 339 KGETD---ALDIDYELSFGGIPVPGKPGTFL----------KkNFHGCIE 375 nvringe<-* n+++ng+ ff02151 376 NLYYNGV 382 PF02210.14.ls: domain 1 of 4, from 253 to 382: score 121.3, E = 2.5e-33 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl F+ q +G+L++ +g++g d +++LeL+ Grl l+++l ff02151 253 FKS-MQGDGVLFHGEGQrG---------D-HITLELQKGRLALHLNL 288 G......sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g. G+++ + s+ + t g+ l+D +WH+V +er g++v ++VD+++++ ++ ff02151 289 GdskarlSSSlPSATLGsLLDDQHWHSVLIERVGKQVNFTVDKHtQHfRt 338 spgssdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCir ++ + l+++++l +GG+p +k+ + ++F+GCi+ ff02151 339 KGETD---ALDIDYELSFGGIPVPGKPGTFL----------KkNFHGCIE 375 nvringe<-* n+++ng+ ff02151 376 NLYYNGV 382 PF00054.13.fs: domain 2 of 4, from 440 to 569: score 48.5, E = 1.5e-13 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl FRT++ +GlLl +++ ++ + l+l L +G l++ + ff02151 440 FRTWNKDGLLL--STELSEGSGT--------LLLSLEGGILRLVIQK 476 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG r a + g + lnDG WHsv+++ + ++tL +d+ea ff02151 477 MTE--RVAEILTGSN-LNDGLWHSVSINARRNRITLTLDDEA-------- 515 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC +p ++++ ++ + y+GG P d+ + +l+ ++f GC ff02151 516 ------APPAPDSTWVQIYSGNSYYFGGCP--DNLTDSQCLNPIKAFQGC 557 irdviingkpld<-* +r + i+++p d ff02151 558 MRLIFIDNQPKD 569 PF02210.14.fs: domain 2 of 4, from 440 to 566: score 106.7, E = 8.6e-31 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl FRT + ++GlLl ++ +g s+ l L+L++G l+l+++ ff02151 440 FRT-WNKDGLLLSTELSeG--------SG-TLLLSLEGGILRLVIQK 476 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vvgspgssdtl +++ + +++g++lnDG WH+Vs+ +++++tL++D++ + +p +++t+ ff02151 477 MTERvAEILTGsNLNDGLWHSVSINARRNRITLTLDDEaA--PPAPDSTW 524 slnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvGCirnvringe + +g+++y+GG+p+++ s ++ + + F+GC+r ++i+++ ff02151 525 VQIYSGNsYYFGGCPDNLTDSQCLNP--------IkAFQGCMRLIFIDNQ 566 <-* ff02151 - - PF02210.14.ls: domain 2 of 4, from 440 to 566: score 108.6, E = 1.7e-29 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGrlvlrydl FRT + ++GlLl ++ +g s+ l L+L++G l+l+++ ff02151 440 FRT-WNKDGLLLSTELSeG--------SG-TLLLSLEGGILRLVIQK 476 Gsgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vvgspgssdtl +++ + +++g++lnDG WH+Vs+ +++++tL++D++ + +p +++t+ ff02151 477 MTERvAEILTGsNLNDGLWHSVSINARRNRITLTLDDEaA--PPAPDSTW 524 slnlngp.lylGGlpesskssllrliaaqnlvtvs.gFvGCirnvringe + +g+++y+GG+p+++ s ++ + + F+GC+r ++i+++ ff02151 525 VQIYSGNsYYFGGCPDNLTDSQCLNP--------IkAFQGCMRLIFIDNQ 566 <-* ff02151 - - PF00054.13.ls: domain 2 of 4, from 440 to 569: score 50.3, E = 5.9e-12 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvdGrlevsydl FRT++ +GlLl +++ ++ + l+l L +G l++ + ff02151 440 FRTWNKDGLLL--STELSEGSGT--------LLLSLEGGILRLVIQK 476 GsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLgG r a + g + lnDG WHsv+++ + ++tL +d+ea ff02151 477 MTE--RVAEILTGSN-LNDGLWHSVSINARRNRITLTLDDEA-------- 515 svvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkGC +p ++++ ++ + y+GG P d+ + +l+ ++f GC ff02151 516 ------APPAPDSTWVQIYSGNSYYFGGCP--DNLTDSQCLNPIKAFQGC 557 irdviingkpld<-* +r + i+++p d ff02151 558 MRLIFIDNQPKD 569 PF00008.17.ls: domain 1 of 2, from 595 to 627: score 34.7, E = 2.9e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pn +C +gG C +++++++C C +ytG +C ff02151 595 CLPN--YCEHGGSCSQSWTTFYCNCSDT---SYTGATC 627 PF00008.17.fs: domain 1 of 2, from 595 to 627: score 32.9, E = 2.6e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pn +C +gG C +++++++C C +ytG +C ff02151 595 CLPN--YCEHGGSCSQSWTTFYCNCSDT---SYTGATC 627 PF00054.13.fs: domain 3 of 4, from 864 to 986: score 62.3, E = 1.6e-17 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvd.Grlevsyd F+Tt+ sG+ l ++ +++ DF+ le+ + ++ + d ff02151 864 FKTTALSGVFL-----ENLGIK-------DFIRLEISSpSEITFAID 898 lGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLg +G+g + +v+ + +lnD++WH v +ern ++ +L+Vd+ r ff02151 899 VGNG--PVELVVQSPSLLNDNQWHYVRAERNLKETSLQVDNLPR------ 940 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG +t+e+ +++ L ++ +L+vGG +++f G ff02151 941 ---STRETSEEGHF---RLQLNSQLFVGGTS-----------SRQKGFLG 973 Cirdviingkpld<-* Cir++++ng+++d ff02151 974 CIRSLHLNGQKMD 986 PF02210.14.fs: domain 3 of 4, from 864 to 983: score 111.9, E = 2.6e-32 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGr.lvlryd F+T t+ +G+ l + g+++ f+ Le+ ++ + +d ff02151 864 FKT-TALSGVFLENLGIkD-----------FIRLEISSPSeITFAID 898 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ ++++ s++ lnD+qWH V++ern ++ +L+VD+ + ++++ +++ ff02151 899 VGnGPVeLVVQSPsLLNDNQWHYVRAERNLKETSLQVDNLpRStReTSEE 948 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri ++ l+ln++l++GG ++gF GCir++ + ff02151 949 GHF-RLQLNSQLFVGGTSSR-----------------QkGFLGCIRSLHL 980 nge<-* ng+ ff02151 981 NGQ 983 PF02210.14.ls: domain 3 of 4, from 864 to 983: score 113.7, E = 4.9e-31 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLvdGr.lvlryd F+T t+ +G+ l + g+++ f+ Le+ ++ + +d ff02151 864 FKT-TALSGVFLENLGIkD-----------FIRLEISSPSeITFAID 898 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs G+++ ++++ s++ lnD+qWH V++ern ++ +L+VD+ + ++++ +++ ff02151 899 VGnGPVeLVVQSPsLLNDNQWHYVRAERNLKETSLQVDNLpRStReTSEE 948 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri ++ l+ln++l++GG ++gF GCir++ + ff02151 949 GHF-RLQLNSQLFVGGTSSR-----------------QkGFLGCIRSLHL 980 nge<-* ng+ ff02151 981 NGQ 983 PF00054.13.ls: domain 3 of 4, from 864 to 986: score 64.1, E = 4.3e-16 *->FRTtepsGlLllgYnGtqterrskkeigdDFlaleLvd.Grlevsyd F+Tt+ sG+ l ++ +++ DF+ le+ + ++ + d ff02151 864 FKTTALSGVFL-----ENLGIK-------DFIRLEISSpSEITFAID 898 lGsgrlrpavvrsgdkvlnDGkWHsvelerngrsgtLsVdgearskktLg +G+g + +v+ + +lnD++WH v +ern ++ +L+Vd+ r ff02151 899 VGNG--PVELVVQSPSLLNDNQWHYVRAERNLKETSLQVDNLPR------ 940 GsvvtgesplgattesttLdvdgkLyvGGlPeldqavkarrlaispsfkG +t+e+ +++ L ++ +L+vGG +++f G ff02151 941 ---STRETSEEGHF---RLQLNSQLFVGGTS-----------SRQKGFLG 973 Cirdviingkpld<-* Cir++++ng+++d ff02151 974 CIRSLHLNGQKMD 986 PF00008.17.fs: domain 2 of 2, from 1005 to 1039: score 23.3, E = 1.2e-05 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* Cs+ C+ngG+Cv+ +gy C+C+ y G++C ff02151 1005 CSSYGSICHNGGKCVEKHNGYLCDCTNS---PYEGPFC 1039 PF00008.17.ls: domain 2 of 2, from 1005 to 1039: score 25.2, E = 0.00021 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* Cs+ C+ngG+Cv+ +gy C+C+ y G++C ff02151 1005 CSSYGSICHNGGKCVEKHNGYLCDCTNS---PYEGPFC 1039 PF02210.14.fs: domain 4 of 4, from 1089 to 1218: score 79.8, E = 6.3e-23 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLv.dGrlvlryd F T tq+ lLl++ + ++ d f+ + L ++G l++ry+ ff02151 1089 FVT-TQAPSLLLFINSSsQ---------D-FVVVLLCkNGSLQVRYH 1124 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs l++ +++v +++ +++++ + H++++ r+gr++t++ D++ +++ +++ ff02151 1125 LNkEEThVFTIDAdNFANRRMHHLKINREGRELTIQMDQQlRLsYnFSPE 1174 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri + + +l lG + e++++ + + a+ gF GC+++v++ ff02151 1175 V---EFRVIRSLTLGKVTENLGLDSEVAKAN------AmGFAGCMSSVQY 1215 nge<-* n++ ff02151 1216 NHI 1218 PF02210.14.ls: domain 4 of 4, from 1089 to 1218: score 81.7, E = 2.2e-21 *->FRTatqpnGlLlyaggk.glpdradpksdKflaLeLv.dGrlvlryd F T tq+ lLl++ + ++ d f+ + L ++G l++ry+ ff02151 1089 FVT-TQAPSLLLFINSSsQ---------D-FVVVLLCkNGSLQVRYH 1124 lG.sgg.vlltsg.plnDGqWHtVsverngrsvtLsVDgg.vv.g.spgs l++ +++v +++ +++++ + H++++ r+gr++t++ D++ +++ +++ ff02151 1125 LNkEEThVFTIDAdNFANRRMHHLKINREGRELTIQMDQQlRLsYnFSPE 1174 sdtlslnlngplylGGlpesskssllrliaaqnlvtvs.gFvGCirnvri + + +l lG + e++++ + + a+ gF GC+++v++ ff02151 1175 V---EFRVIRSLTLGKVTENLGLDSEVAKAN------AmGFAGCMSSVQY 1215 nge<-* n++ ff02151 1216 NHI 1218 //