hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-02335020/chunk_1/iprscan-20080809-02335020.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff02556y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 1200.4 0 1 PF00063.11.fs Myosin head (motor domain) 1198.5 0 1 PF06017.4.ls Myosin tail 268.2 1.5e-77 1 PF06017.4.fs Myosin tail 266.4 5.3e-77 1 PF00612.17.ls IQ calmodulin-binding motif 87.6 3.4e-23 6 PF00612.17.fs IQ calmodulin-binding motif 75.7 1.5e-21 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.fs 1/1 106 777 .. 1 791 [] 1198.5 0 PF00063.11.ls 1/1 106 777 .. 1 791 [] 1200.4 0 PF00612.17.fs 1/6 794 814 .. 1 21 [] 21.9 1.8e-05 PF00612.17.ls 1/6 794 814 .. 1 21 [] 23.9 0.00051 PF00612.17.fs 3/6 840 860 .. 1 21 [] 26.3 8.9e-07 PF00612.17.ls 3/6 840 860 .. 1 21 [] 28.3 2.5e-05 PF00612.17.ls 4/6 869 889 .. 1 21 [] 12.3 1.7 PF06017.4.ls 1/1 1029 1225 .] 1 242 [] 268.2 1.5e-77 PF06017.4.fs 1/1 1029 1225 .] 1 242 [] 266.4 5.3e-77 Alignments of top-scoring domains: PF00063.11.fs: domain 1 of 1, from 106 to 777: score 1198.5, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v D+v+L+ lnE+++++NLkkR++ +IYTY+G v +svNPY+ Lp ff02556y2 106 VGDMVLLEPLNEETFINNLKKRFD-HSEIYTYIGSVVISVNPYRSLP 151 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY++e +++Yr+++ +El PHiFA++deAYRs+++ ++Q+Ili+GESGA ff02556y2 152 IYSPEKVEEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGA 201 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKTE++K+vm+Y+A+v+g++++v+ ++++q+lqsNP+LEA ff02556y2 202 GKTEASKLVMSYVAAVCGKGAEVN-----------QVKEQLLQSNPVLEA 240 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT+RN+NSSRFGK++ I+Fd +G++ Gg+I++YLLEKSRVv+ ff02556y2 241 FGNAKTVRNDNSSRFGKYMDIEFDFKGDP----LGGVISNYLLEKSRVVK 286 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+ gERNFH+FYQLL+gas+++ +++LkL++ d ++Y+YL+ + ff02556y2 287 QPRGERNFHVFYQLLSGASEEL-LNKLKLER--DFSRYNYLSL-D----S 328 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk +v g+DDa++F+ +r+A+ i+Gf d e +s++ ++AA+L+LGNie Fk ff02556y2 329 AKV-NGVDDAANFRTVRNAMQIVGFMDHEAESVLAVVAAVLKLGNIE-FK 376 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG + G +e+ + +++e l +i+eL G+D+++Le+a+ +r++++ ff02556y2 377 PESRVNGLDESK---IKDKNE--LKEICELTGIDQSVLERAFSFRTVEA- 420 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ + e+v++ +nv qA+yaRDALAK++YsRLF W+V++iN++++a++ ff02556y2 421 ----KQEKVSTTLNVAQAYYARDALAKNLYSRLFSWLVNRINESIKAQT- 465 asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN + +++GvLDIyGFEIF e N ff02556y2 466 --K--------------------------VRKKVMGVLDIYGFEIF-EDN 486 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci SFEQ+ INY+NEKLQQ+F+++++k EQEEY+rE+IeWt+Idy ++n +++ ff02556y2 487 SFEQFIINYCNEKLQQIFIELTLKEEQEEYIREDIEWTHIDY-FNNAIIC 535 dLIEkKkPpGIlslLDEeCrfPka.tDqtFldKLlqtfsskhprlthFAq dLIE+ + +GIl++LDEeC++P tD+tFl+KL+q h hF + ff02556y2 536 DLIEN-NTNGILAMLDEECLRPGTvTDETFLEKLNQVC-ATHQ---HF-E 579 kpgrfkkgk....srqgkteFiikHYAGdVeYnaegfleKNkDpLfddli + k + ++++ ++F+i HYAG+V Y++egf +KN+D+L++dl+ ff02556y2 580 SR-MSKCSRflndTSLPHSCFRIQHYAGKVLYQVEGFVDKNNDLLYRDLS 628 sllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksakl ++++++s+ l+ +LFpe ff02556y2 629 QAMWKASH-ALIKSLFPE-------------------------------- 645 gsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNe g + ++ +k++ +T+gsqfk s+++Lmk+L + nP+++RCIKPN+ ff02556y2 646 --GNPAKINLKRP-PTAGSQFKASVATLMKNLQTK---NPNYIRCIKPND 689 kKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLa kK+a+ F++ lV hQ+r+lG+LE ++R+rraG+++R+++ + l+RY++L+ ff02556y2 690 KKAAHIFNEALVCHQIRYLGLLE-NVRVRRAGYAFRQAYEPCLERYKMLC 738 pktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR< ++tw p w+g a++g+e ++++l ++ eey fG +KiF+R ff02556y2 739 KQTW-----PHWKGPARSGVEVLFNEL-----EIPVEEYSFGRSKIFIR 777 -* ff02556y2 - - PF00063.11.ls: domain 1 of 1, from 106 to 777: score 1200.4, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v D+v+L+ lnE+++++NLkkR++ +IYTY+G v +svNPY+ Lp ff02556y2 106 VGDMVLLEPLNEETFINNLKKRFD-HSEIYTYIGSVVISVNPYRSLP 151 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY++e +++Yr+++ +El PHiFA++deAYRs+++ ++Q+Ili+GESGA ff02556y2 152 IYSPEKVEEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGA 201 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKTE++K+vm+Y+A+v+g++++v+ ++++q+lqsNP+LEA ff02556y2 202 GKTEASKLVMSYVAAVCGKGAEVN-----------QVKEQLLQSNPVLEA 240 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT+RN+NSSRFGK++ I+Fd +G++ Gg+I++YLLEKSRVv+ ff02556y2 241 FGNAKTVRNDNSSRFGKYMDIEFDFKGDP----LGGVISNYLLEKSRVVK 286 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+ gERNFH+FYQLL+gas+++ +++LkL++ d ++Y+YL+ + ff02556y2 287 QPRGERNFHVFYQLLSGASEEL-LNKLKLER--DFSRYNYLSL-D----S 328 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk +v g+DDa++F+ +r+A+ i+Gf d e +s++ ++AA+L+LGNie Fk ff02556y2 329 AKV-NGVDDAANFRTVRNAMQIVGFMDHEAESVLAVVAAVLKLGNIE-FK 376 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG + G +e+ + +++e l +i+eL G+D+++Le+a+ +r++++ ff02556y2 377 PESRVNGLDESK---IKDKNE--LKEICELTGIDQSVLERAFSFRTVEA- 420 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ + e+v++ +nv qA+yaRDALAK++YsRLF W+V++iN++++a++ ff02556y2 421 ----KQEKVSTTLNVAQAYYARDALAKNLYSRLFSWLVNRINESIKAQT- 465 asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN + +++GvLDIyGFEIF e N ff02556y2 466 --K--------------------------VRKKVMGVLDIYGFEIF-EDN 486 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci SFEQ+ INY+NEKLQQ+F+++++k EQEEY+rE+IeWt+Idy ++n +++ ff02556y2 487 SFEQFIINYCNEKLQQIFIELTLKEEQEEYIREDIEWTHIDY-FNNAIIC 535 dLIEkKkPpGIlslLDEeCrfPka.tDqtFldKLlqtfsskhprlthFAq dLIE+ + +GIl++LDEeC++P tD+tFl+KL+q h hF + ff02556y2 536 DLIEN-NTNGILAMLDEECLRPGTvTDETFLEKLNQVC-ATHQ---HF-E 579 kpgrfkkgk....srqgkteFiikHYAGdVeYnaegfleKNkDpLfddli + k + ++++ ++F+i HYAG+V Y++egf +KN+D+L++dl+ ff02556y2 580 SR-MSKCSRflndTSLPHSCFRIQHYAGKVLYQVEGFVDKNNDLLYRDLS 628 sllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksakl ++++++s+ l+ +LFpe ff02556y2 629 QAMWKASH-ALIKSLFPE-------------------------------- 645 gsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNe g + ++ +k++ +T+gsqfk s+++Lmk+L + nP+++RCIKPN+ ff02556y2 646 --GNPAKINLKRP-PTAGSQFKASVATLMKNLQTK---NPNYIRCIKPND 689 kKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLa kK+a+ F++ lV hQ+r+lG+LE ++R+rraG+++R+++ + l+RY++L+ ff02556y2 690 KKAAHIFNEALVCHQIRYLGLLE-NVRVRRAGYAFRQAYEPCLERYKMLC 738 pktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR< ++tw p w+g a++g+e ++++l ++ eey fG +KiF+R ff02556y2 739 KQTW-----PHWKGPARSGVEVLFNEL-----EIPVEEYSFGRSKIFIR 777 -* ff02556y2 - - PF00612.17.fs: domain 1 of 6, from 794 to 814: score 21.9, E = 1.8e-05 *->rraaikIQaawRGylaRkryk<-* ++ a++IQ+ +RG+++R ++ ff02556y2 794 EDLATLIQKIYRGWKCRTHFL 814 PF00612.17.ls: domain 1 of 6, from 794 to 814: score 23.9, E = 0.00051 *->rraaikIQaawRGylaRkryk<-* ++ a++IQ+ +RG+++R ++ ff02556y2 794 EDLATLIQKIYRGWKCRTHFL 814 PF00612.17.fs: domain 3 of 6, from 840 to 860: score 26.3, E = 8.9e-07 *->rraaikIQaawRGylaRkryk<-* + +a++IQ+++RG++aRk ++ ff02556y2 840 KSSALVIQSYIRGWKARKILR 860 PF00612.17.ls: domain 3 of 6, from 840 to 860: score 28.3, E = 2.5e-05 *->rraaikIQaawRGylaRkryk<-* + +a++IQ+++RG++aRk ++ ff02556y2 840 KSSALVIQSYIRGWKARKILR 860 PF00612.17.ls: domain 4 of 6, from 869 to 889: score 12.3, E = 1.7 *->rraaikIQaawRGylaRkryk<-* ++a+++I a+w G +aR++++ ff02556y2 869 KEAVTTIAAYWHGTQARRELR 889 PF06017.4.ls: domain 1 of 1, from 1029 to 1225: score 268.2, E = 1.5e-77 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase +K++Ase+fk+KK+ y++Sv+ ++F+G YL++++ npk+++++ + ff02556y2 1029 EKLEASELFKDKKALYPSSVG--QPFQGAYLEINK-NPKYKKLKDAI 1072 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl e E k++ a+ V+K+nR+ +gK+++R++lLT+++l+l ff02556y2 1073 E-----E------KIIIAEV----VNKINRA-NGKSTSRIFLLTNNNLLL 1106 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvke.dl + dqk ++K +Pl+++t+vS+S+ +D++f++H+ke+++ ff02556y2 1107 A-----------DQKSGQIKSEVPLVDVTKVSMSSQNDGFFAVHLKEgSE 1145 akgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsds a+ kgD+++++dh +E+ t+L++t+l++t++ kln++ +sd+ ff02556y2 1146 AASKGDFLFSSDHL--------IEMATKLYRTTLSQTKQ-KLNIE-ISDE 1185 ieyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* + +++++ +k++++ +q ++ +gs++++ K+k+++l ++a++ ff02556y2 1186 FLVQFRQ-----DKVCVKFIQGNQKNGSVPTC-KRKNNRLLEVAVP 1225 PF06017.4.fs: domain 1 of 1, from 1029 to 1225: score 266.4, E = 5.3e-77 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase +K++Ase+fk+KK+ y++Sv+ ++F+G YL++++ npk+++++ + ff02556y2 1029 EKLEASELFKDKKALYPSSVG--QPFQGAYLEINK-NPKYKKLKDAI 1072 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl e E k++ a+ V+K+nR+ +gK+++R++lLT+++l+l ff02556y2 1073 E-----E------KIIIAEV----VNKINRA-NGKSTSRIFLLTNNNLLL 1106 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvke.dl + dqk ++K +Pl+++t+vS+S+ +D++f++H+ke+++ ff02556y2 1107 A-----------DQKSGQIKSEVPLVDVTKVSMSSQNDGFFAVHLKEgSE 1145 akgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsds a+ kgD+++++dh +E+ t+L++t+l++t++ kln++ +sd+ ff02556y2 1146 AASKGDFLFSSDHL--------IEMATKLYRTTLSQTKQ-KLNIE-ISDE 1185 ieyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* + +++++ +k++++ +q ++ +gs++++ K+k+++l ++a++ ff02556y2 1186 FLVQFRQ-----DKVCVKFIQGNQKNGSVPTC-KRKNNRLLEVAVP 1225 //