hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-02412760/chunk_1/iprscan-20080809-02412760.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff02842 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 519.8 2.8e-153 1 PF07714.7.fs Protein tyrosine kinase 517.9 1e-152 1 PF00757.10.ls Furin-like cysteine rich region 328.1 1.4e-95 1 PF00757.10.fs Furin-like cysteine rich region 326.3 5.1e-95 1 PF01030.14.ls Receptor L domain 322.5 7e-94 2 PF01030.14.fs Receptor L domain 318.9 8.3e-93 2 PF00069.15.fs Protein kinase domain 133.3 9.4e-38 1 PF00069.15.ls Protein kinase domain 135.2 1.7e-37 1 PF00041.11.fs Fibronectin type III domain 42.6 1.3e-11 4 PF00041.11.ls Fibronectin type III domain 15.4 0.0042 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01030.14.fs 1/2 61 171 .. 1 145 [] 155.3 6e-45 PF01030.14.ls 1/2 61 171 .. 1 145 [] 157.1 4.3e-44 PF00757.10.ls 1/1 185 343 .. 1 179 [] 328.1 1.4e-95 PF00757.10.fs 1/1 185 343 .. 1 179 [] 326.3 5.1e-95 PF01030.14.fs 2/2 362 477 .. 1 145 [] 163.6 2.4e-47 PF01030.14.ls 2/2 362 477 .. 1 145 [] 165.4 1.4e-46 PF00041.11.ls 1/2 499 597 .. 1 84 [] 5.8 0.038 PF00041.11.ls 2/2 845 927 .. 1 84 [] 9.6 0.016 PF00069.15.ls 1/1 1008 1275 .. 1 287 [] 135.2 1.7e-37 PF07714.7.ls 1/1 1008 1275 .. 1 272 [] 519.8 2.8e-153 PF07714.7.fs 1/1 1008 1275 .. 1 272 [] 517.9 1e-152 PF00069.15.fs 1/1 1008 1275 .. 1 287 [] 133.3 9.4e-38 Alignments of top-scoring domains: PF01030.14.fs: domain 1 of 2, from 61 to 171: score 155.3, E = 6e-45 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nCtvIeG+L+I+l+s ++ed++++ ++++++ ff02842 61 NCTVIEGYLHILLIS---------KAEDYRSY--------RFPKLTV 90 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl it+yLl++r+ g++++ +++pNL+vIrG +lf+ nyalvi+++ n ff02842 91 ITEYLLLFRVAGLESLGDLFPNLTVIRGWKLFY-----NYALVIFEMTN- 134 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- L+++gl++L++It+ G ++i++N +LCy+ t +dw+li+ ff02842 135 ------LKDIGLYNLRNITR--GAIRIEKNA--DLCYLST-VDWSLIL 171 * ff02842 - - PF01030.14.ls: domain 1 of 2, from 61 to 171: score 157.1, E = 4.3e-44 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nCtvIeG+L+I+l+s ++ed++++ ++++++ ff02842 61 NCTVIEGYLHILLIS---------KAEDYRSY--------RFPKLTV 90 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl it+yLl++r+ g++++ +++pNL+vIrG +lf+ nyalvi+++ n ff02842 91 ITEYLLLFRVAGLESLGDLFPNLTVIRGWKLFY-----NYALVIFEMTN- 134 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- L+++gl++L++It+ G ++i++N +LCy+ t +dw+li+ ff02842 135 ------LKDIGLYNLRNITR--GAIRIEKNA--DLCYLST-VDWSLIL 171 * ff02842 - - PF00757.10.ls: domain 1 of 1, from 185 to 343: score 328.1, E = 1.4e-95 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv ++eC+++C+GT+e+k ++C+kttiN+e++yRCW+++ +CQk + ff02842 185 PKECGDLCPGTMEEK-PMCEKTTINNEYNYRCWTTN--RCQK----M 224 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi Cps+C++ r+Ct++n+ CCH+eC+G+C+ +P+++t+C+ACRh+y++G+ ff02842 225 CPSTCGK-RACTENNE--CCHPECLGSCS--APDNDTACVACRHYYYAGV 269 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr C+++CPp+ty++e++r+vd+++++++ +++s+ +s+++v+h+G+C++ ff02842 270 CVPACPPNTYRFEGWRCVDRDFCANILSAESS----DSEGFVIHDGECMQ 315 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +CPsg ++++g s++++C++C eGpCPKvCe ff02842 316 ECPSG-FIRNG--SQSMYCIPC-EGPCPKVCE 343 PF00757.10.fs: domain 1 of 1, from 185 to 343: score 326.3, E = 5.1e-95 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv ++eC+++C+GT+e+k ++C+kttiN+e++yRCW+++ +CQk + ff02842 185 PKECGDLCPGTMEEK-PMCEKTTINNEYNYRCWTTN--RCQK----M 224 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi Cps+C++ r+Ct++n+ CCH+eC+G+C+ +P+++t+C+ACRh+y++G+ ff02842 225 CPSTCGK-RACTENNE--CCHPECLGSCS--APDNDTACVACRHYYYAGV 269 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr C+++CPp+ty++e++r+vd+++++++ +++s+ +s+++v+h+G+C++ ff02842 270 CVPACPPNTYRFEGWRCVDRDFCANILSAESS----DSEGFVIHDGECMQ 315 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +CPsg ++++g s++++C++C eGpCPKvCe ff02842 316 ECPSG-FIRNG--SQSMYCIPC-EGPCPKVCE 343 PF01030.14.fs: domain 2 of 2, from 362 to 477: score 163.6, E = 2.4e-47 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +Ct+++GnL I++r++n ni++ele+ + ++ie+ ff02842 362 GCTIFKGNLLINIRRGN-------NIASELEN--------FMGLIEV 393 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl +tGy++I+++ ++lvslsFL+NLr I G++ ++ ny++++ldN+n ff02842 394 VTGYVKIRHS-HALVSLSFLKNLRLILGEEQLEG----NYSFYVLDNQN- 437 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- L++L+++ ++++t+k+G++y+ +Np kLC +e++ ++++++ ff02842 438 ------LQQLWDWDHRNLTIKAGKMYFAFNP--KLCVSEIYRMEEVTG 477 * ff02842 - - PF01030.14.ls: domain 2 of 2, from 362 to 477: score 165.4, E = 1.4e-46 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee +Ct+++GnL I++r++n ni++ele+ + ++ie+ ff02842 362 GCTIFKGNLLINIRRGN-------NIASELEN--------FMGLIEV 393 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl +tGy++I+++ ++lvslsFL+NLr I G++ ++ ny++++ldN+n ff02842 394 VTGYVKIRHS-HALVSLSFLKNLRLILGEEQLEG----NYSFYVLDNQN- 437 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- L++L+++ ++++t+k+G++y+ +Np kLC +e++ ++++++ ff02842 438 ------LQQLWDWDHRNLTIKAGKMYFAFNP--KLCVSEIYRMEEVTG 477 * ff02842 - - PF00041.11.ls: domain 1 of 2, from 499 to 597: score 5.8, E = 0.038 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyR....qpk s + +t t ++ + + ++W + ++++ +++ +++v y + + +++ ff02842 499 ESDVLHFTSTTTSKNRIIITWHRYRppDYRDLISFTVYYKeapfKNV 545 ngge.........wkeltvpgt.....ttsytltgLkPgteYtvrVqAvn + ++++ ++++w+ ++v+ +++++ + l+gLkP t+Y v+V+Av+ ff02842 546 TEYDgqdacgsnsWNMVDVDLPpnkdvEPGILLHGLKPWTQYAVYVKAVT 595 ggGGpeS<-* + ff02842 596 -----LT 597 PF00041.11.ls: domain 2 of 2, from 845 to 927: score 9.6, E = 0.016 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P+++t +++ ++s+ l W P+++ng i Ye++y ++ + ff02842 845 PGPVT---WEPRPENSIFLKWPEPEnPNGLILMYEIKY-GSQVED-- 885 keltvpgt...tt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* ++ v++++ ++++ + l+ L+Pg +Yt r+qA + G+G ++ ff02842 886 QRECVSRQeyrKYgGAKLNRLNPG-NYTARIQATSLSGnGSWT 927 PF00069.15.ls: domain 1 of 1, from 1008 to 1275: score 135.2, E = 1.7e-37 *->yelleklGsGsfGtVykakhkgtgk.....iVAvKiikkrkekskkd ++ + lG+GsfG Vy+++ kg k++++++VA+K+++ + +++ ++ ff02842 1008 ITMSRELGQGSFGMVYEGVAKGVVKdepetRVAIKTVN-EAASMRER 1053 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf ++ ++ E++++k++++ ++vrl++v+ ++ +++E++ G dL+ ff02842 1054 IEFLN--EASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRG----DLK 1097 dyls..e..trrkgpll.fsedeakkialQilrgleYLHsngiiHRDLKP +yl++ +++ +++ +l + s + +a +i+ g++YL +n+++HRDL ff02842 1098 SYLRslRpeMENNPVLApPSLSKMIQMAGEIADGMAYLNANKFVHRDLAA 1147 eNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTp..wYmAPEv N+++ ++ +v Ki+DFG + + ++ + ++ G ++ ++m+PE ff02842 1148 RNCMVAEDFTV----KIGDFGMTRDI-YeTDYyRKGGKGLLpvRWMSPES 1192 llggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkil l+ + +t +DvWS+Gv+l+e +t + P++g s+ l + + + ff02842 1193 LK-DGVFTTYSDVWSFGVVLWEIATlAEQPYQGL---SnEQVLRFVMEGG 1238 gpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeei + + ++p + + +L++ c++++P+ R+++ ei ff02842 1239 LLDKPDNCP-----------------DMLFELMRMCWQYNPKMRPSFLEI 1271 lqHPwf<-* + + ff02842 1272 ISS--I 1275 PF07714.7.ls: domain 1 of 1, from 1008 to 1275: score 519.8, E = 2.8e-153 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei +++ ++LG+G+FG+Vy+G++kg +d++e+ VA+Kt++e as +e ff02842 1008 ITMSRELGQGSFGMVYEGVAKGvVKDEPETRVAIKTVNE-AASMRE- 1052 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r +Fl+EAs+Mk++ +++++VrLlGv+++ g+P ++++E+m Gd ff02842 1053 -RIEFLNEASVMKEF-NCHHVVRLLGVVSQ-GQP----TLVIMELMTRGD 1095 LldfLrkhr.......egrpLtlkdLlsfalQiAkGMeYLesknfvHRDL L+++Lr+ r++ ++++ p++l+ ++++a +iA+GM+YL +++fvHRDL ff02842 1096 LKSYLRSLRpemennpVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDL 1145 AARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslk AARNc+V+e+++VKI+DFG++Rdiy++dyY rk+g+g lPv+Wm+PEslk ff02842 1146 AARNCMVAEDFTVKIGDFGMTRDIYETDYY-RKGGKGLLPVRWMSPESLK 1194 ygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr +g+Ft+ SDVWSFGV+LWEi tl eqP Y+g+sne+vl ++ ++G+ L++ ff02842 1195 DGVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNEQVLRFV-MEGGLLDK 1242 PenCPdelYdlMlqCWaedPedRPtFselveeL<-* P+nCPd l +lM++CW+++P++RP+F e+++ + ff02842 1243 PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI 1275 PF07714.7.fs: domain 1 of 1, from 1008 to 1275: score 517.9, E = 1e-152 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei +++ ++LG+G+FG+Vy+G++kg +d++e+ VA+Kt++e as +e ff02842 1008 ITMSRELGQGSFGMVYEGVAKGvVKDEPETRVAIKTVNE-AASMRE- 1052 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd r +Fl+EAs+Mk++ +++++VrLlGv+++ g+P ++++E+m Gd ff02842 1053 -RIEFLNEASVMKEF-NCHHVVRLLGVVSQ-GQP----TLVIMELMTRGD 1095 LldfLrkhr.......egrpLtlkdLlsfalQiAkGMeYLesknfvHRDL L+++Lr+ r++ ++++ p++l+ ++++a +iA+GM+YL +++fvHRDL ff02842 1096 LKSYLRSLRpemennpVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDL 1145 AARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslk AARNc+V+e+++VKI+DFG++Rdiy++dyY rk+g+g lPv+Wm+PEslk ff02842 1146 AARNCMVAEDFTVKIGDFGMTRDIYETDYY-RKGGKGLLPVRWMSPESLK 1194 ygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLpr +g+Ft+ SDVWSFGV+LWEi tl eqP Y+g+sne+vl ++ ++G+ L++ ff02842 1195 DGVFTTYSDVWSFGVVLWEIATLAEQP-YQGLSNEQVLRFV-MEGGLLDK 1242 PenCPdelYdlMlqCWaedPedRPtFselveeL<-* P+nCPd l +lM++CW+++P++RP+F e+++ + ff02842 1243 PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI 1275 PF00069.15.fs: domain 1 of 1, from 1008 to 1275: score 133.3, E = 9.4e-38 *->yelleklGsGsfGtVykakhkgtgk.....iVAvKiikkrkekskkd ++ + lG+GsfG Vy+++ kg k++++++VA+K+++ + +++ ++ ff02842 1008 ITMSRELGQGSFGMVYEGVAKGVVKdepetRVAIKTVN-EAASMRER 1053 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf ++ ++ E++++k++++ ++vrl++v+ ++ +++E++ G dL+ ff02842 1054 IEFLN--EASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRG----DLK 1097 dyls..e..trrkgpll.fsedeakkialQilrgleYLHsngiiHRDLKP +yl++ +++ +++ +l + s + +a +i+ g++YL +n+++HRDL ff02842 1098 SYLRslRpeMENNPVLApPSLSKMIQMAGEIADGMAYLNANKFVHRDLAA 1147 eNILldnngvvdaflKiaDFGlAkklst.sss.lttfvGTp..wYmAPEv N+++ ++ +v Ki+DFG + + ++ + ++ G ++ ++m+PE ff02842 1148 RNCMVAEDFTV----KIGDFGMTRDI-YeTDYyRKGGKGLLpvRWMSPES 1192 llggngygtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkil l+ + +t +DvWS+Gv+l+e +t + P++g s+ l + + + ff02842 1193 LK-DGVFTTYSDVWSFGVVLWEIATlAEQPYQGL---SnEQVLRFVMEGG 1238 gpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeei + + ++p + + +L++ c++++P+ R+++ ei ff02842 1239 LLDKPDNCP-----------------DMLFELMRMCWQYNPKMRPSFLEI 1271 lqHPwf<-* + + ff02842 1272 ISS--I 1275 //