hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-02412760/chunk_1/iprscan-20080809-02412760.nocrc
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Query sequence: ff02842
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00219                                                 484.8   4.1e-141   1
SM00220                                                 141.0    1.3e-37   1
SM00060                                                  86.6      3e-21   3
SM00261                                                  56.7    2.9e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00261    1/1     237   280 ..     1    48 []    56.7  2.9e-12
SM00060    1/3     499   602 ..     1    69 []    25.0    0.011
SM00060    2/3     621   824 ..     1    69 []    29.9  0.00034
SM00060    3/3     842   924 ..     1    69 []    31.7   0.0001
SM00219    1/1    1008  1275 ..     1   280 []   484.8 4.1e-141
SM00220    1/1    1008  1276 ..     1   231 []   141.0  1.3e-37

Alignments of top-scoring domains:
SM00261: domain 1 of 1, from 237 to 280: score 56.7, E = 2.9e-12
                   *->dgvCkpChpsCatGCtGpg.adqCtsCkhgyyldgngtCvseCppgt
                      +++C  Chp+C++ C+ p+++++C++C+h+yy    g+Cv+ Cpp+t
     ff02842   237    NNEC--CHPECLGSCSAPDnDTACVACRHYYYA---GVCVPACPPNT 278  

                   ya<-*
                   y+   
     ff02842   279 YR    280  

SM00060: domain 1 of 3, from 499 to 602: score 25.0, E = 0.011
                   *->PgpPsnptelrvtdvtststsdltsvtlsWe...pP........ivg
                       + + +   ++ t ++++       + ++W + +pP++ +  + +v+
     ff02842   499    ESDVLH---FTSTTTSKN------RIIITWHryrPPdyrdlisfTVY 536  

                   Yr.....................................ytltgLkPgae
                   Y++ + +++++ ++++  ++++++ ++++ +++++++++  l+gLkP+  
     ff02842   537 YKeapfknvteydgqdacgsnswnmvdvdlppnkdvepgILLHGLKPW-- 584  

                   pwteYefrVrAvngndaGeg<-*
                     t+Y + V+Av+ +++      
     ff02842   585 --TQYAVYVKAVTLTMVEND    602  

SM00060: domain 2 of 3, from 621 to 824: score 29.9, E = 0.00034
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY
                      P+ P +   +   + +s+      ++ ++W+pP+ ++++ +++iv++
     ff02842   621    PSIPLD---VLSASNSSS------QLIVKWNPPslpngnlsyyIVRW 658  

                   r.................................................
                   +++++++   + +  ++++ + ++  +++ + +++++++++++ ++++++
     ff02842   659 Qrqpqdgylyrhnycskdkipirkyadgtidieevtenpktevcggekgp 708  

                   ..................................................
                       ++++ +++ ++++ + +++ ++   ++  +++++++++++ ++ ++
     ff02842   709 ccacpkteaekqaekeeaeyrkvfenflhnsifvprperkrrdvmqvant 758  

                   .......................................ytltgLkPgae
                   + ++++++++  ++ + +++++ +++ +  +++++++++ ++++L+P   
     ff02842   759 tmssrsrnttaadtynitdpeeleteypffesrvdnkerTVISNLRPF-- 806  

                   pwteYefrVrAvngndaGeg<-*
                     t Y++ +   n+ +   g   
     ff02842   807 --TLYRIDIHSCNHEAEKLG    824  

SM00060: domain 3 of 3, from 842 to 924: score 31.7, E = 0.0001
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                       + P+    +++++  ++      s+ l+W +P+++++ i+ Y+ + 
     ff02842   842    DDIPGP---VTWEPRPEN------SIFLKWPEPenpnglILMYEiky 879  

                   .....................ytltgLkPgaepwteYefrVrAvngndaG
                   +++++++++ +++++ ++ ++++l  L Pg     +Y+ r++A +    G
     ff02842   880 gsqvedqrecvsrqeyrkyggAKLNRLNPG-----NYTARIQATSL--SG 922  

                   eg<-*
                    g   
     ff02842   923 NG    924  

SM00219: domain 1 of 1, from 1008 to 1275: score 484.8, E = 4.1e-141
                   *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda....ke
                      +t+ ++LG G FG Vy+G++k+  ++++++ VA+Kt++e a+ +++ 
     ff02842  1008    ITMSRELGQGSFGMVYEGVAKgvvkdepeTRVAIKTVNEAAsmreRI 1054 

                   eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd
                   eFl+Ea++Mk++  +  ++V+LlGv++++       +P +++mE+m  Gd
     ff02842  1055 EFLNEASVMKEF--NCHHVVRLLGVVSQG-------QPTLVIMELMTRGD 1095 

                   LldyLrknrpk.........lslsdLlsfAlQIAkGMeYLesknfvHRDL
                   L++yLr+ rp+ ++++   + sls+++++A  IA+GM+YL  ++fvHRDL
     ff02842  1096 LKSYLRSLRPEmennpvlapPSLSKMIQMAGEIADGMAYLNANKFVHRDL 1145 

                   AARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllP
                   AARNc+v+e+++vKI+DFG++Rd+y+        dyYrk    ggk+llP
     ff02842  1146 AARNCMVAEDFTVKIGDFGMTRDIYET-------DYYRK----GGKGLLP 1184 

                   irWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsnee
                   +rWm+PEslkdg+Ft+ SDVWSFGV+LWEi tl eqPY g     +sne+
     ff02842  1185 VRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQG-----LSNEQ 1229 

                   vleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel
                   vl+++++G+ l+kP+n        CPd l++lM++CW+++P++RP+F e+
     ff02842  1230 VLRFVMEGGLLDKPDN--------CPDMLFELMRMCWQYNPKMRPSFLEI 1271 

                   verl<-*
                   ++ +   
     ff02842  1272 ISSI    1275 

SM00220: domain 1 of 1, from 1008 to 1276: score 141.0, E = 1.3e-37
                   *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik........e
                       ++ ++lG+G+FG Vy ++ k+  +++   +vAiK +++  + ++++
     ff02842  1008    ITMSRELGQGSFGMVYEGVAKGvvkdePETRVAIKTVNeaasmrerI 1054 

                   rilrEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkk
                    +l+E +++k+ ++ ++V+L++v   ++   ++mE++    GdL+++l++
     ff02842  1055 EFLNEASVMKEfNCHHVVRLLGVVSQgQPTLVIMELMTR--GDLKSYLRS 1102 

                   rgrrglrkvl.........sE.earfyfrQilsaLeYLHsqgIiHRDLKP
                    +++     +++++   ++s +    ++ +i+++++YL  ++++HRDL  
     ff02842  1103 LRPE-----MennpvlappSLsKMIQMAGEIADGMAYLNANKFVHRDLAA 1147 

                   eNiLLds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl...g
                    N ++ ++ +vK++DFG+ r + +++  +++        +m+PE l+++ 
     ff02842  1148 RNCMVAEdfTVKIGDFGMTRDIyetdyyrkgGKGLLPVRWMSPESLkdgV 1197 

                   YgkpavDiWSlGcilyEllt.GkpPFp..qldlifkkig...........
                   +++  +D+WS+G++l+E +t  + P+++   +++++ +++++  +++++ 
     ff02842  1198 FTT-YSDVWSFGVVLWEIATlAEQPYQglSNEQVLRFVMegglldkpdnc 1246 

                   SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   ++ + +L++ +++++P+ R++  e+                
     ff02842  1247 PDMLFELMRMCWQYNPKMRPSFlEIIS--------SIK    1276 

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