hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-13524737/chunk_1/iprscan-20090525-13524737.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff03388 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 384.1 1.9e-112 12 PF00096.16.fs Zinc finger, C2H2 type 360.5 2.5e-105 12 PF01352.17.fs KRAB box 90.7 3.8e-25 1 PF01352.17.ls KRAB box 92.7 1e-24 1 PF01096.9.fs Transcription factor S-II (TFIIS) 60.8 4.1e-18 11 PF07754.2.fs Domain of unknown function (DUF1610) 70.5 4.9e-18 11 PF01286.9.fs XPA protein N-terminal 64.1 1.6e-17 10 PF07754.2.ls Domain of unknown function (DUF1610) 38.9 1.6e-08 8 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 22.9 1e-06 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 20 60 .. 1 41 [] 90.7 3.8e-25 PF01352.17.ls 1/1 20 60 .. 1 41 [] 92.7 1e-24 PF00096.16.ls 1/12 189 211 .. 1 24 [] 32.8 1.1e-06 PF00096.16.fs 1/12 189 211 .. 1 24 [] 30.8 2e-06 PF00096.16.ls 2/12 217 239 .. 1 24 [] 23.9 0.00054 PF00096.16.fs 3/12 245 267 .. 1 24 [] 35.6 1.3e-07 PF00096.16.ls 3/12 245 267 .. 1 24 [] 37.5 4.1e-08 PF00096.16.ls 4/12 273 295 .. 1 24 [] 23.3 0.00078 PF00096.16.ls 5/12 301 323 .. 1 24 [] 28.4 2.4e-05 PF00096.16.fs 5/12 301 323 .. 1 24 [] 26.4 2.5e-05 PF00096.16.ls 6/12 329 351 .. 1 24 [] 33.6 6.4e-07 PF00096.16.fs 6/12 329 351 .. 1 24 [] 31.6 1.2e-06 PF00096.16.fs 7/12 357 379 .. 1 24 [] 33.8 3.7e-07 PF00096.16.ls 7/12 357 379 .. 1 24 [] 35.7 1.5e-07 PF00096.16.fs 8/12 385 407 .. 1 24 [] 38.1 2.9e-08 PF00096.16.ls 8/12 385 407 .. 1 24 [] 40.0 7.4e-09 PF00096.16.ls 9/12 413 435 .. 1 24 [] 33.5 6.9e-07 PF00096.16.fs 9/12 413 435 .. 1 24 [] 31.5 1.3e-06 PF00096.16.ls 10/12 441 463 .. 1 24 [] 28.5 2.1e-05 PF00096.16.fs 10/12 441 463 .. 1 24 [] 26.6 2.2e-05 PF00096.16.fs 11/12 469 491 .. 1 24 [] 26.4 2.4e-05 PF00096.16.ls 11/12 469 491 .. 1 24 [] 28.4 2.3e-05 PF00096.16.fs 12/12 497 519 .. 1 24 [] 36.4 7.9e-08 PF00096.16.ls 12/12 497 519 .. 1 24 [] 38.4 2.3e-08 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 20 to 60: score 90.7, E = 3.8e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+ EEW++Ld aQrnLYr+VM ENy+nLv+lg ff03388 20 LTFRDVAIEFSLEEWQCLDTAQRNLYRKVMFENYRNLVFLG 60 PF01352.17.ls: domain 1 of 1, from 20 to 60: score 92.7, E = 1e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +tF+DVa++F+ EEW++Ld aQrnLYr+VM ENy+nLv+lg ff03388 20 LTFRDVAIEFSLEEWQCLDTAQRNLYRKVMFENYRNLVFLG 60 PF00096.16.ls: domain 1 of 12, from 189 to 211: score 32.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+ s+L++H+r+H ff03388 189 FKCK-ECGKSFCMLSHLTQHIRIH 211 PF00096.16.fs: domain 1 of 12, from 189 to 211: score 30.8, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF+ s+L++H+r+H ff03388 189 FKCK-ECGKSFCMLSHLTQHIRIH 211 PF00096.16.ls: domain 2 of 12, from 217 to 239: score 23.9, E = 0.00054 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+ + s+L +H+ +H ff03388 217 YKCE-ECGKVLNWFSELIKHKGIH 239 PF00096.16.fs: domain 3 of 12, from 245 to 267: score 35.6, E = 1.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+++H ff03388 245 YKCE-ECGKAFNQSSTLIKHKKIH 267 PF00096.16.ls: domain 3 of 12, from 245 to 267: score 37.5, E = 4.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+++s+L +H+++H ff03388 245 YKCE-ECGKAFNQSSTLIKHKKIH 267 PF00096.16.ls: domain 4 of 12, from 273 to 295: score 23.3, E = 0.00078 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs s L +H+ +H ff03388 273 FKCE-ECGKAFSLFSILSKHKIIH 295 PF00096.16.ls: domain 5 of 12, from 301 to 323: score 28.4, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ ++L++H+r+H ff03388 301 YKCD-ECHKAFNWFATLTNHKRIH 323 PF00096.16.fs: domain 5 of 12, from 301 to 323: score 26.4, E = 2.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C+k+F+ ++L++H+r+H ff03388 301 YKCD-ECHKAFNWFATLTNHKRIH 323 PF00096.16.ls: domain 6 of 12, from 329 to 351: score 33.6, E = 6.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F++ snL++H+++H ff03388 329 FKCE-ECGKDFNQFSNLTKHKKIH 351 PF00096.16.fs: domain 6 of 12, from 329 to 351: score 31.6, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F++ snL++H+++H ff03388 329 FKCE-ECGKDFNQFSNLTKHKKIH 351 PF00096.16.fs: domain 7 of 12, from 357 to 379: score 33.8, E = 3.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ +nL+rH+++H ff03388 357 YKCE-ECGKAFNQFANLTRHKKIH 379 PF00096.16.ls: domain 7 of 12, from 357 to 379: score 35.7, E = 1.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ +nL+rH+++H ff03388 357 YKCE-ECGKAFNQFANLTRHKKIH 379 PF00096.16.fs: domain 8 of 12, from 385 to 407: score 38.1, E = 2.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++snL+ H+r+H ff03388 385 YKCE-ECGKAFIQSSNLTEHMRIH 407 PF00096.16.ls: domain 8 of 12, from 385 to 407: score 40.0, E = 7.4e-09 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F ++snL+ H+r+H ff03388 385 YKCE-ECGKAFIQSSNLTEHMRIH 407 PF00096.16.ls: domain 9 of 12, from 413 to 435: score 33.5, E = 6.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ s+L+rH+r+H ff03388 413 YKCE-ECGKAFNGCSSLTRHKRIH 435 PF00096.16.fs: domain 9 of 12, from 413 to 435: score 31.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ s+L+rH+r+H ff03388 413 YKCE-ECGKAFNGCSSLTRHKRIH 435 PF00096.16.ls: domain 10 of 12, from 441 to 463: score 28.5, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ s+L++H+ +H ff03388 441 YKCE-ECGKGFTLFSTLTNHKVIH 463 PF00096.16.fs: domain 10 of 12, from 441 to 463: score 26.6, E = 2.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+ s+L++H+ +H ff03388 441 YKCE-ECGKGFTLFSTLTNHKVIH 463 PF00096.16.fs: domain 11 of 12, from 469 to 491: score 26.4, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg +F+ +++L +H+r+H ff03388 469 YKCD-ECGNVFNWPATLANHKRIH 491 PF00096.16.ls: domain 11 of 12, from 469 to 491: score 28.4, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg +F+ +++L +H+r+H ff03388 469 YKCD-ECGNVFNWPATLANHKRIH 491 PF00096.16.fs: domain 12 of 12, from 497 to 519: score 36.4, E = 7.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+s+L+rH+++H ff03388 497 YKCE-ECGKAFNRSSHLTRHKKIH 519 PF00096.16.ls: domain 12 of 12, from 497 to 519: score 38.4, E = 2.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+r+s+L+rH+++H ff03388 497 YKCE-ECGKAFNRSSHLTRHKKIH 519 //