hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-13524737/chunk_1/iprscan-20090525-13524737.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff03388 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 335.4 3.8e-96 12 SM00349 137.1 1.9e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 20 80 .. 1 62 [] 137.1 1.9e-36 SM00355 1/12 189 211 .. 1 23 [] 26.8 0.0031 SM00355 2/12 217 239 .. 1 23 [] 25.0 0.01 SM00355 3/12 245 267 .. 1 23 [] 30.6 0.00021 SM00355 4/12 273 295 .. 1 23 [] 21.7 0.1 SM00355 5/12 301 323 .. 1 23 [] 27.0 0.0027 SM00355 6/12 329 351 .. 1 23 [] 28.6 0.00084 SM00355 7/12 357 379 .. 1 23 [] 31.1 0.00015 SM00355 8/12 385 407 .. 1 23 [] 33.5 2.8e-05 SM00355 9/12 413 435 .. 1 23 [] 28.1 0.0012 SM00355 10/12 441 463 .. 1 23 [] 24.7 0.013 SM00355 11/12 469 491 .. 1 23 [] 27.2 0.0022 SM00355 12/12 497 519 .. 1 23 [] 31.1 0.00016 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 20 to 80: score 137.1, E = 1.9e-36 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +tF+DVA++Fs EEW++LD+aQrnLYR VM ENY+nLv+LG +vsk ff03388 20 LTFRDVAIEFSLEEWQCLDTAQRNLYRKVMFENYRNLVFLG-IAVSK 65 pdliskLEqgeEpwi<-* p li++LEqg+Epw+ ff03388 66 PHLITCLEQGKEPWN 80 SM00355: domain 1 of 12, from 189 to 211: score 26.8, E = 0.0031 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgksf+ ++L++H+r+H ff03388 189 FKCKE-CGKSFCMLsHLTQHIRIH 211 SM00355: domain 2 of 12, from 217 to 239: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+ ++ ++L++H +H ff03388 217 YKCEE-CGKVLNWFsELIKHKGIH 239 SM00355: domain 3 of 12, from 245 to 267: score 30.6, E = 0.00021 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L++H ++H ff03388 245 YKCEE-CGKAFNQSsTLIKHKKIH 267 SM00355: domain 4 of 12, from 273 to 295: score 21.7, E = 0.1 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk fs + L +H +H ff03388 273 FKCEE-CGKAFSLFsILSKHKIIH 295 SM00355: domain 5 of 12, from 301 to 323: score 27.0, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f++ L++H r+H ff03388 301 YKCDE-CHKAFNWFaTLTNHKRIH 323 SM00355: domain 6 of 12, from 329 to 351: score 28.6, E = 0.00084 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f++ ++L++H ++H ff03388 329 FKCEE-CGKDFNQFsNLTKHKKIH 351 SM00355: domain 7 of 12, from 357 to 379: score 31.1, E = 0.00015 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ +L+rH ++H ff03388 357 YKCEE-CGKAFNQFaNLTRHKKIH 379 SM00355: domain 8 of 12, from 385 to 407: score 33.5, E = 2.8e-05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + ++L++Hmr+H ff03388 385 YKCEE-CGKAFIQSsNLTEHMRIH 407 SM00355: domain 9 of 12, from 413 to 435: score 28.1, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ ++L+rH r+H ff03388 413 YKCEE-CGKAFNGCsSLTRHKRIH 435 SM00355: domain 10 of 12, from 441 to 463: score 24.7, E = 0.013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ + L++H +H ff03388 441 YKCEE-CGKGFTLFsTLTNHKVIH 463 SM00355: domain 11 of 12, from 469 to 491: score 27.2, E = 0.0022 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg +f+++ L +H r+H ff03388 469 YKCDE-CGNVFNWPaTLANHKRIH 491 SM00355: domain 12 of 12, from 497 to 519: score 31.1, E = 0.00016 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++L+rH ++H ff03388 497 YKCEE-CGKAFNRSsHLTRHKKIH 519 //