hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-13302817/chunk_1/iprscan-20090416-13302817.nocrc
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Query sequence: ff03389
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00647                                                 119.1    4.8e-31   2
SM00184                                                  25.5     0.0076   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00184    1/1     132   179 ..     1    23 []    25.5   0.0076
SM00647    1/2     199   264 ..     1    78 []    97.7  1.4e-24
SM00647    2/2     283   347 ..     1    78 []    21.5    0.017

Alignments of top-scoring domains:
SM00184: domain 1 of 1, from 132 to 179: score 25.5, E = 0.0076
                   *->CpICle.......pvvlpCgH.FCr.Ci................CPl
                      Cp+Cl ++++++ p +++C+H+ C +C+++  + + ++++ + +CP 
     ff03389   132    CPLCLLrhskdrfPDIMTCHHrSCVdCLrqylrieisesrvnisCPE 178  

                   C<-*
                   C   
     ff03389   179 C    179  

SM00647: domain 1 of 2, from 199 to 264: score 97.7, E = 1.4e-24
                   *->ekYerlllesyvesnpdlkwCPapdCsaairvtelstsrsaisgasd
                      ekYe+++l++++  +pd++wCPapdC++a+++ +             
     ff03389   199    EKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFG------------- 232  

                   eegcnrvtCpr.kCgfsFCfrCkvewHspvsC<-*
                   +++c++ tC r++Cg++FC++Ck+ wH++++C   
     ff03389   233 CASCPKLTCGReGCGTEFCYHCKQIWHPNQTC    264  

SM00647: domain 2 of 2, from 283 to 347: score 21.5, E = 0.017
                   *->ekYerlllesyvesnpdlkwCPapdC.saairvtelstsrsaisgas
                          +  + ++  +  d+k CP  +C  ++i+               
     ff03389   283    SSISYSQESGAAAD--DIKPCP--RCaAYIIKMN------------- 312  

                   deegcnrvtCprkCgfsFCfrCkvew...Hspv..sC<-*
                    +++cn++tC   Cg +FC+ C++e ++ H+ +++ C   
     ff03389   313 -DGSCNHMTCA-VCGCEFCWLCMKEIsdlHYLSpsGC    347  

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