hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03010082/chunk_1/iprscan-20080809-03010082.nocrc
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Query sequence: ff03440
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
SM00185                                                 162.7    3.6e-44   7

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
SM00185        1/7     342   394 ..     1    38 []    32.0  8.4e-05
SM00185        2/7     461   512 ..     1    38 []    28.6  0.00086
SM00185        3/7     514   555 ..     1    38 []    28.2   0.0012
SM00185        4/7     558   599 ..     1    38 []    22.5    0.058
SM00185        5/7     601   646 ..     1    38 []     6.4       77
SM00185        6/7     651   691 ..     1    38 []    40.9  1.7e-07
SM00185        7/7     693   733 ..     1    38 []     4.2  1.5e+02

Alignments of top-scoring domains:
SM00185: domain 1 of 7, from 342 to 394: score 32.0, E = 8.4e-05
                   *->ndenkqavvdaGglpaLvqLL...............deevqkeAawa
                      +++ ++ ++++G+lp+L+qLL+++++++   ++++++ e +  A  a
     ff03440   342    SQDSCISMRQSGCLPLLIQLLhgndkdsvllgnsrgSKEARARASAA 388  

                   LsNlas<-*
                   L+N+ +   
     ff03440   389 LHNIIH    394  

SM00185: domain 2 of 7, from 461 to 512: score 28.6, E = 0.00086
                   *->ndenkqavvdaGglpaLvqLL..............deevqkeAawaL
                      ++e+++a+ ++Ggl+a+ +LL+ + +  + ++++ +  ++++A +aL
     ff03440   461    DEEHRHAMNELGGLQAIAELLqvdcemygltndhySITLRRYAGMAL 507  

                   sNlas<-*
                   +Nl++   
     ff03440   508 TNLTF    512  

SM00185: domain 3 of 7, from 514 to 555: score 28.2, E = 0.0012
                   *->ndenkqavvdaG.glpaLvqLL...deevqkeAawaLsNlas<-*
                      +  nk++++ +++++ aLv  L++++e++q+++a++L+Nl++   
     ff03440   514    DVANKATLCSMKgCMRALVAQLkseSEDLQQVIASVLRNLSW    555  

SM00185: domain 4 of 7, from 558 to 599: score 22.5, E = 0.058
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      +   k+++++ G ++aL+++  + ++e+ +k +++aL+Nl++   
     ff03440   558    DVNSKKTLREVGSVKALMECAlevkKESTLKSVLSALWNLSA    599  

SM00185: domain 5 of 7, from 601 to 646: score 6.4, E = 77
                   *->ndenkqavvdaG.glpaLvqLL.......deevqkeAawaLsNlas<
                      + enk++++   ++l  Lv  L+ +++++   +++   + L+N++s 
     ff03440   601    CTENKADICAVDgALAFLVGTLtyrsqtnTLAIIESGGGILRNVSS  646  

                   -*
                     
     ff03440     -    -    

SM00185: domain 6 of 7, from 651 to 691: score 40.9, E = 1.7e-07
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      n++++q++++ ++l+ L+q L++++  ++ +A+++L+Nl++   
     ff03440   651    NEDHRQILRENNCLQTLLQHLkshSLTIVSNACGTLWNLSA    691  

SM00185: domain 7 of 7, from 693 to 733: score 4.2, E = 1.5e+02
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      n++  +a+ d+G++  L +L+++++  +    a aL+Nl +   
     ff03440   693    NPKDQEALWDMGAVSMLKNLIhskHKMIAMGSAAALRNLMA    733  

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