hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03093870/chunk_1/iprscan-20080809-03093870.nocrc
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Query sequence: ff03515
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01661.11.ls Appr-1-p processing enzyme family              139.0    1.2e-38   1
PF01661.11.fs Appr-1-p processing enzyme family              137.1    4.4e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01661.11.fs   1/1      36   150 ..     1   125 []   137.1  4.4e-38
PF01661.11.ls   1/1      36   150 ..     1   125 []   139.0  1.2e-38

Alignments of top-scoring domains:
PF01661.11.fs: domain 1 of 1, from 36 to 150: score 137.1, E = 4.4e-38
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      +N++N +         + + + +++G+e+ e+  el+kk+g+   ++
     ff03515    36    INPTNADIDL---KDDLGNTLEKKGGKEFVEAVLELRKKNGP---LE 76   

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                   +  A++  g+ Lpak+VIH+  P+w    g + +eelL++  +n+L+lA+
     ff03515    77 VAGAAVSAGHGLPAKFVIHCNSPVW----GADKCEELLEKTVKNCLALAD 122  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   +++lksiAfP+I++G  GfPk++aa+++   
     ff03515   123 DKKLKSIAFPSIGSGRNGFPKQTAAQLI    150  

PF01661.11.ls: domain 1 of 1, from 36 to 150: score 139.0, E = 1.2e-38
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      +N++N +         + + + +++G+e+ e+  el+kk+g+   ++
     ff03515    36    INPTNADIDL---KDDLGNTLEKKGGKEFVEAVLELRKKNGP---LE 76   

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                   +  A++  g+ Lpak+VIH+  P+w    g + +eelL++  +n+L+lA+
     ff03515    77 VAGAAVSAGHGLPAKFVIHCNSPVW----GADKCEELLEKTVKNCLALAD 122  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   +++lksiAfP+I++G  GfPk++aa+++   
     ff03515   123 DKKLKSIAFPSIGSGRNGFPKQTAAQLI    150  

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