# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Off04527.fasta.nr -Q ff04527.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ff04527, 511 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6804669 sequences Expectation_n fit: rho(ln(x))= 6.9606+/-0.000208; mu= 4.2825+/- 0.012 mean_var=157.9216+/-29.588, 0's: 39 Z-trim: 105 B-trim: 0 in 0/65 Lambda= 0.102060 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|148706791|gb|EDL38738.1| trinucleotide repeat c ( 538) 3205 483.7 4.5e-134 gi|74756184|sp|Q5SZQ8.1|CELF3_HUMAN CUG-BP- and ET ( 465) 3126 472.0 1.3e-130 gi|25807801|gb|AAN73884.1| CUG-BP and ETR-3 like f ( 465) 3121 471.3 2.2e-130 gi|148706793|gb|EDL38740.1| trinucleotide repeat c ( 466) 3108 469.4 8.1e-130 gi|163781027|gb|ABY40803.1| trinucleotide repeat c ( 471) 3104 468.8 1.2e-129 gi|149030747|gb|EDL85784.1| similar to trinucleoti ( 473) 3100 468.2 1.9e-129 gi|114559517|ref|XP_524868.2| PREDICTED: trinucleo ( 464) 3099 468.1 2e-129 gi|194036214|ref|XP_001929662.1| PREDICTED: simila ( 463) 3090 466.7 5.1e-129 gi|81914478|sp|Q8CIN6|CELF3_MOUSE CUG-BP- and ETR- ( 465) 3090 466.7 5.1e-129 gi|73981474|ref|XP_862540.1| PREDICTED: similar to ( 462) 3089 466.6 5.6e-129 gi|71297206|gb|AAH52491.1| Trinucleotide repeat co ( 464) 3088 466.4 6.2e-129 gi|12746392|gb|AAK07474.1|AF329264_1 CUG-BP and ET ( 462) 3084 465.9 9.4e-129 gi|122132428|sp|Q08E07|CELF3_BOVIN CUG-BP- and ETR ( 461) 3072 464.1 3.2e-128 gi|183637597|gb|ACC64599.1| trinucleotide repeat c ( 459) 3041 459.5 7.5e-127 gi|126313728|ref|XP_001366642.1| PREDICTED: simila ( 458) 3030 457.9 2.3e-126 gi|55960556|emb|CAI17168.1| trinucleotide repeat c ( 465) 3029 457.8 2.6e-126 gi|148706789|gb|EDL38736.1| trinucleotide repeat c ( 467) 3011 455.1 1.6e-125 gi|73981458|ref|XP_540319.2| PREDICTED: similar to ( 484) 2817 426.6 6.6e-117 gi|62088108|dbj|BAD92501.1| trinucleotide repeat c ( 441) 2814 426.1 8.4e-117 gi|45786151|gb|AAH68008.1| TNRC4 protein [Homo sap ( 407) 2718 411.9 1.4e-112 gi|119573804|gb|EAW53419.1| trinucleotide repeat c ( 388) 2598 394.2 2.9e-107 gi|118103585|ref|XP_001231286.1| PREDICTED: simila ( 504) 2412 366.9 6.1e-99 gi|119573805|gb|EAW53420.1| trinucleotide repeat c ( 353) 2358 358.8 1.2e-96 gi|73981454|ref|XP_862276.1| PREDICTED: similar to ( 426) 2337 355.8 1.1e-95 gi|73981472|ref|XP_862518.1| PREDICTED: similar to ( 446) 2329 354.7 2.7e-95 gi|126313730|ref|XP_001366691.1| PREDICTED: simila ( 446) 2306 351.3 2.8e-94 gi|2565067|gb|AAB91444.1| CAGH4 [Homo sapiens] ( 358) 2224 339.1 1e-90 gi|152013388|sp|Q91579|CEL3A_XENLA CUG-BP- and ETR ( 462) 2223 339.1 1.4e-90 gi|606976|gb|AAA81375.1| ribonucleoprotein ( 462) 2222 338.9 1.5e-90 gi|158253638|gb|AAI54064.1| Tnrc4 protein [Xenopus ( 462) 2217 338.2 2.5e-90 gi|82241483|sp|Q7ZWM3|CEL3B_XENLA CUG-BP- and ETR- ( 462) 2192 334.5 3.2e-89 gi|73981464|ref|XP_862411.1| PREDICTED: similar to ( 419) 2185 333.4 6.1e-89 gi|73981456|ref|XP_862301.1| PREDICTED: similar to ( 419) 2181 332.9 9.2e-89 gi|148706790|gb|EDL38737.1| trinucleotide repeat c ( 567) 2162 330.2 8e-88 gi|73981466|ref|XP_850830.1| PREDICTED: similar to ( 483) 2068 316.3 1e-83 gi|73981468|ref|XP_862464.1| PREDICTED: similar to ( 424) 2057 314.6 2.9e-83 gi|35505365|gb|AAH57553.1| Tnrc4 protein [Mus musc ( 494) 2047 313.2 9e-83 gi|73981470|ref|XP_862492.1| PREDICTED: similar to ( 501) 2043 312.6 1.4e-82 gi|126313732|ref|XP_001366746.1| PREDICTED: simila ( 424) 2040 312.1 1.7e-82 gi|148706792|gb|EDL38739.1| trinucleotide repeat c ( 447) 1952 299.2 1.4e-78 gi|190339155|gb|AAI63416.1| Unknown (protein for M ( 528) 1953 299.4 1.4e-78 gi|152013393|sp|Q9IBD1|CELF3_DANRE CUG-BP- and ETR ( 452) 1880 288.6 2.1e-75 gi|7670536|dbj|BAA95118.1| Etr-1 [Danio rerio] ( 452) 1878 288.3 2.6e-75 gi|189530389|ref|XP_001335316.2| PREDICTED: simila ( 442) 1859 285.5 1.8e-74 gi|126272943|ref|XP_001371226.1| PREDICTED: simila ( 491) 1841 282.9 1.2e-73 gi|118103583|ref|XP_424495.2| PREDICTED: similar t ( 492) 1816 279.2 1.6e-72 gi|149638168|ref|XP_001508614.1| PREDICTED: simila ( 446) 1815 279.0 1.6e-72 gi|145306688|gb|ABP57108.1| CUG-BP and ETR-3-like ( 445) 1806 277.7 4e-72 gi|28279033|gb|AAH45711.1| BRUNOL4 protein [Homo s ( 448) 1792 275.6 1.7e-71 gi|114672887|ref|XP_512100.2| PREDICTED: similar t ( 524) 1781 274.1 5.8e-71 >>gi|148706791|gb|EDL38738.1| trinucleotide repeat conta (538 aa) initn: 1992 init1: 1866 opt: 3205 Z-score: 2562.2 bits: 483.7 E(): 4.5e-134 Smith-Waterman score: 3205; 94.584% identity (96.132% similar) in 517 aa overlap (1-511:27-538) 10 20 30 ff0452 QRGWGPKGKPAPAGP---PGPTTYLLAGQLP-LA : ::::: : : :: : :...: :..: : gi|148 HCLPRPLTPSPQLPRPPLCEEPSSAQQCGWGPKEKLALLGPWALP-PASWL--GSFPCLW 10 20 30 40 50 40 50 60 70 80 ff0452 FGPL-PAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKY .: :.: ::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|148 SSPCSPTP-GPSSWAAPMKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKY 60 70 80 90 100 110 90 100 110 120 130 140 ff0452 TGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLG ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|148 TGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESRG-DRKLFVGMLG 120 130 140 150 160 170 150 160 170 180 190 200 ff0452 KQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPG 180 190 200 210 220 230 210 220 230 240 250 260 ff0452 ASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAALVAAHS 240 250 260 270 280 290 270 280 290 300 310 320 ff0452 AYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYS ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|148 AYLSPMATMAAVQMQHMAAISANGLIATPITPSSGTSTPPAIAATPVSAIPAALGVNGYS 300 310 320 330 340 350 330 340 350 360 370 380 ff0452 PVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAF 360 370 380 390 400 410 390 400 410 420 430 440 ff0452 PQPPALVAQQPPPPPQQQQQQQQQQQQQQQ-REGPDGCNIFIYHLPQEFTDSEILQMFVP :::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|148 PQPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVP 420 430 440 450 460 470 450 460 470 480 490 500 ff0452 FGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 480 490 500 510 520 530 510 ff0452 RPY ::: gi|148 RPY >>gi|74756184|sp|Q5SZQ8.1|CELF3_HUMAN CUG-BP- and ETR-3- (465 aa) initn: 3126 init1: 3126 opt: 3126 Z-score: 2500.1 bits: 472.0 E(): 1.3e-130 Smith-Waterman score: 3126; 100.000% identity (100.000% similar) in 465 aa overlap (47-511:1-465) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|747 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE 340 350 360 370 380 390 440 450 460 470 480 490 ff0452 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 400 410 420 430 440 450 500 510 ff0452 LKVQLKRPKDANRPY ::::::::::::::: gi|747 LKVQLKRPKDANRPY 460 >>gi|25807801|gb|AAN73884.1| CUG-BP and ETR-3 like facto (465 aa) initn: 3121 init1: 3121 opt: 3121 Z-score: 2496.1 bits: 471.3 E(): 2.2e-130 Smith-Waterman score: 3121; 99.785% identity (100.000% similar) in 465 aa overlap (47-511:1-465) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|258 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|258 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|258 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|258 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|258 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|258 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPVAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|258 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE 340 350 360 370 380 390 440 450 460 470 480 490 ff0452 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|258 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 400 410 420 430 440 450 500 510 ff0452 LKVQLKRPKDANRPY ::::::::::::::: gi|258 LKVQLKRPKDANRPY 460 >>gi|148706793|gb|EDL38740.1| trinucleotide repeat conta (466 aa) initn: 2490 init1: 2490 opt: 3108 Z-score: 2485.8 bits: 469.4 E(): 8.1e-130 Smith-Waterman score: 3108; 99.571% identity (99.785% similar) in 466 aa overlap (47-511:1-466) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|148 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|148 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAISANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQ-REGPDGCNIFIYHLPQ ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|148 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQ 340 350 360 370 380 390 440 450 460 470 480 490 ff0452 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 400 410 420 430 440 450 500 510 ff0452 RLKVQLKRPKDANRPY :::::::::::::::: gi|148 RLKVQLKRPKDANRPY 460 >>gi|163781027|gb|ABY40803.1| trinucleotide repeat conta (471 aa) initn: 2498 init1: 2498 opt: 3104 Z-score: 2482.5 bits: 468.8 E(): 1.2e-129 Smith-Waterman score: 3104; 98.726% identity (98.726% similar) in 471 aa overlap (47-511:1-471) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|163 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQ------REGPDGCNIFI ::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|163 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQQQQREGPDGCNIFI 340 350 360 370 380 390 440 450 460 470 480 490 ff0452 YHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 YHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF 400 410 420 430 440 450 500 510 ff0452 QIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::: gi|163 QIGMKRLKVQLKRPKDANRPY 460 470 >>gi|149030747|gb|EDL85784.1| similar to trinucleotide r (473 aa) initn: 2609 init1: 2498 opt: 3100 Z-score: 2479.3 bits: 468.2 E(): 1.9e-129 Smith-Waterman score: 3100; 98.309% identity (98.309% similar) in 473 aa overlap (47-511:1-473) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|149 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQ--------REGPDGCNI ::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|149 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQQQQQQQQREGPDGCNI 340 350 360 370 380 390 430 440 450 460 470 480 ff0452 FIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 FIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 400 410 420 430 440 450 490 500 510 ff0452 GFQIGMKRLKVQLKRPKDANRPY ::::::::::::::::::::::: gi|149 GFQIGMKRLKVQLKRPKDANRPY 460 470 >>gi|114559517|ref|XP_524868.2| PREDICTED: trinucleotide (464 aa) initn: 2883 init1: 2481 opt: 3099 Z-score: 2478.6 bits: 468.1 E(): 2e-129 Smith-Waterman score: 3099; 99.570% identity (99.570% similar) in 465 aa overlap (47-511:1-464) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|114 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LMQQQAALEAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|114 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQ-REGPDGCNIFIYHLPQE 340 350 360 370 380 440 450 460 470 480 490 ff0452 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 390 400 410 420 430 440 500 510 ff0452 LKVQLKRPKDANRPY ::::::::::::::: gi|114 LKVQLKRPKDANRPY 450 460 >>gi|194036214|ref|XP_001929662.1| PREDICTED: similar to (463 aa) initn: 2803 init1: 2313 opt: 3090 Z-score: 2471.5 bits: 466.7 E(): 5.1e-129 Smith-Waterman score: 3090; 99.570% identity (99.570% similar) in 465 aa overlap (47-511:1-463) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|194 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|194 -YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQ-REGPDGCNIFIYHLPQE 340 350 360 370 380 440 450 460 470 480 490 ff0452 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 390 400 410 420 430 440 500 510 ff0452 LKVQLKRPKDANRPY ::::::::::::::: gi|194 LKVQLKRPKDANRPY 450 460 >>gi|81914478|sp|Q8CIN6|CELF3_MOUSE CUG-BP- and ETR-3-li (465 aa) initn: 1866 init1: 1866 opt: 3090 Z-score: 2471.5 bits: 466.7 E(): 5.1e-129 Smith-Waterman score: 3090; 99.356% identity (99.571% similar) in 466 aa overlap (47-511:1-465) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|819 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 RG-DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 150 160 170 180 190 200 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|819 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAISANGLIATPITPSSGTSTPPAIAATPV 210 220 230 240 250 260 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 270 280 290 300 310 320 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQ-REGPDGCNIFIYHLPQ ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: gi|819 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQ 330 340 350 360 370 380 440 450 460 470 480 490 ff0452 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 390 400 410 420 430 440 500 510 ff0452 RLKVQLKRPKDANRPY :::::::::::::::: gi|819 RLKVQLKRPKDANRPY 450 460 >>gi|73981474|ref|XP_862540.1| PREDICTED: similar to tri (462 aa) initn: 2697 init1: 2477 opt: 3089 Z-score: 2470.7 bits: 466.6 E(): 5.6e-129 Smith-Waterman score: 3089; 99.355% identity (99.355% similar) in 465 aa overlap (47-511:1-462) 20 30 40 50 60 70 ff0452 GPTTYLLAGQLPLAFGPLPAPLGPSSWAASMKEPDAIKLFVGQIPRHLEEKDLKPIFEQF :::::::::::::::::::::::::::::: gi|739 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQF 10 20 30 80 90 100 110 120 130 ff0452 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSES 40 50 60 70 80 90 140 150 160 170 180 190 ff0452 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQA 100 110 120 130 140 150 200 210 220 230 240 250 ff0452 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 AINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQA 160 170 180 190 200 210 260 270 280 290 300 310 ff0452 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPV 220 230 240 250 260 270 320 330 340 350 360 370 ff0452 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTA 280 290 300 310 320 330 380 390 400 410 420 430 ff0452 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQE :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|739 AYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQ---REGPDGCNIFIYHLPQE 340 350 360 370 380 440 450 460 470 480 490 ff0452 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 FTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 390 400 410 420 430 440 500 510 ff0452 LKVQLKRPKDANRPY ::::::::::::::: gi|739 LKVQLKRPKDANRPY 450 460 511 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 03:19:59 2008 done: Sat Aug 9 03:22:20 2008 Total Scan time: 872.690 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]