hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03222154/chunk_1/iprscan-20080809-03222154.nocrc
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Query sequence: ff04527
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    210.9    2.8e-60   3
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    205.0    1.6e-58   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3      55   129 ..     1    74 []    54.5  1.6e-14
PF00076.12.ls   1/3      55   129 ..     1    74 []    56.4  8.7e-14
PF00076.12.fs   2/3     143   214 ..     1    74 []    59.8  5.2e-16
PF00076.12.ls   2/3     143   214 ..     1    74 []    61.7  2.2e-15
PF00076.12.fs   3/3     428   499 ..     1    74 []    90.8  1.1e-24
PF00076.12.ls   3/3     428   499 ..     1    74 []    92.8  9.9e-25

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 55 to 129: score 54.5, E = 1.6e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg +p+ + e+dLk +F++fG+i +  +++D  + tg +kG+aF 
     ff04527    55    LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKD--KYTGLHKGCAFL 99   

                   eFedeedAekAldalnG.kel..ggrelrv<-*
                   ++   ++A kA +al+++k+l++++r++ v   
     ff04527   100 TYCARDSALKAQSALHEqKTLpgMNRPIQV    129  

PF00076.12.ls: domain 1 of 3, from 55 to 129: score 56.4, E = 8.7e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg +p+ + e+dLk +F++fG+i +  +++D  + tg +kG+aF 
     ff04527    55    LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKD--KYTGLHKGCAFL 99   

                   eFedeedAekAldalnG.kel..ggrelrv<-*
                   ++   ++A kA +al+++k+l++++r++ v   
     ff04527   100 TYCARDSALKAQSALHEqKTLpgMNRPIQV    129  

PF00076.12.fs: domain 2 of 3, from 143 to 214: score 59.8, E = 5.2e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg L +  t+ed++++F++fG i ++ + r      g skG+aFV
     ff04527   143    LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG---PDGTSKGCAFV 186  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F+++ +A++A+ +l+ +++l g        
     ff04527   187 KFQTHAEAQAAINTLHSsRTLPGASSSL    214  

PF00076.12.ls: domain 2 of 3, from 143 to 214: score 61.7, E = 2.2e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVg L +  t+ed++++F++fG i ++ + r      g skG+aFV
     ff04527   143    LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG---PDGTSKGCAFV 186  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   +F+++ +A++A+ +l+ +++l g        
     ff04527   187 KFQTHAEAQAAINTLHSsRTLPGASSSL    214  

PF00076.12.fs: domain 3 of 3, from 428 to 499: score 90.8, E = 1.1e-24
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +f+  Lp++ t++++ ++F +fG ++s+k++ D  r+t++sk f+FV
     ff04527   428    IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD--RATNQSKCFGFV 472  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+++ +A++A++a+nG+++g ++l+v   
     ff04527   473 SFDNPASAQAAIQAMNGFQIGMKRLKV    499  

PF00076.12.ls: domain 3 of 3, from 428 to 499: score 92.8, E = 9.9e-25
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +f+  Lp++ t++++ ++F +fG ++s+k++ D  r+t++sk f+FV
     ff04527   428    IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD--RATNQSKCFGFV 472  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+++ +A++A++a+nG+++g ++l+v   
     ff04527   473 SFDNPASAQAAIQAMNGFQIGMKRLKV    499  

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