hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03222154/chunk_1/iprscan-20080809-03222154.nocrc
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Query sequence: ff04527
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 257.6      1e-72   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/3      54   130 ..     1   121 []    79.2  5.1e-19
SM00360    2/3     142   217 ..     1   121 []    80.3  2.4e-19
SM00360    3/3     427   500 ..     1   121 []    98.1    1e-24

Alignments of top-scoring domains:
SM00360: domain 1 of 3, from 54 to 130: score 79.2, E = 5.1e-19
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lfVg +  p    e+dL+ +F              ++fG + +  +
     ff04527    54    KLFVGQI--PRHLEEKDLKPIF--------------EQFGRIFELTV 84   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++dk                      TG +kG+aF ++  +++A kA  +
     ff04527    85 IKDKY---------------------TGLHKGCAFLTYCARDSALKA--Q 111  

                   ealnaskGkeledgGrptlglrVe<-*
                   +al+++k  +   ++rp   ++V+   
     ff04527   112 SALHEQKTLPG--MNRP---IQVK    130  

SM00360: domain 2 of 3, from 142 to 217: score 80.3, E = 2.4e-19
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lfVg L   ++ t+ed+r++F              ++fG++ ++ +
     ff04527   142    KLFVGML--GKQQTDEDVRKMF--------------EPFGTIDECTV 172  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +r +d                      G skG+aFV+F ++++A++A  i
     ff04527   173 LRGPD----------------------GTSKGCAFVKFQTHAEAQAA--I 198  

                   ealnaskGkeledgGrptlglrVe<-*
                   + l+ s+  +          l V+   
     ff04527   199 NTLHSSRTLPG--ASSS---LVVK    217  

SM00360: domain 3 of 3, from 427 to 500: score 98.1, E = 1e-24
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++f+  L  p + t++++ ++F               +fG+v+s+++
     ff04527   427    NIFIYHL--PQEFTDSEILQMF--------------VPFGHVISAKV 457  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + d+                      T++sk+f+FV F+++++A++A  i
     ff04527   458 FVDRA---------------------TNQSKCFGFVSFDNPASAQAA--I 484  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a+n   G+++  g ++   l+V+   
     ff04527   485 QAMN---GFQI--GMKR---LKVQ    500  

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