hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-13585898/chunk_1/iprscan-20090525-13585898.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff05119 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 438.8 6.6e-129 14 PF00096.16.fs Zinc finger, C2H2 type 411.3 1.3e-120 14 PF01352.17.fs KRAB box 84.2 2.8e-23 1 PF01352.17.ls KRAB box 86.2 9.3e-23 1 PF01286.9.fs XPA protein N-terminal 57.0 1.8e-15 14 PF01096.9.fs Transcription factor S-II (TFIIS) 39.1 2.2e-11 9 PF02892.5.fs BED zinc finger 37.9 1.6e-10 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 100 140 .. 1 41 [] 86.2 9.3e-23 PF01352.17.fs 1/1 100 140 .. 1 41 [] 84.2 2.8e-23 PF00096.16.ls 1/14 290 312 .. 1 24 [] 32.4 1.4e-06 PF00096.16.fs 1/14 290 312 .. 1 24 [] 30.5 2.4e-06 PF00096.16.ls 2/14 318 340 .. 1 24 [] 28.7 1.8e-05 PF00096.16.fs 2/14 318 340 .. 1 24 [] 26.8 2e-05 PF00096.16.ls 3/14 346 368 .. 1 24 [] 29.5 1.1e-05 PF00096.16.fs 3/14 346 368 .. 1 24 [] 27.5 1.3e-05 PF00096.16.ls 4/14 374 396 .. 1 24 [] 31.7 2.3e-06 PF00096.16.fs 4/14 374 396 .. 1 24 [] 29.8 3.6e-06 PF00096.16.fs 5/14 402 424 .. 1 24 [] 27.5 1.3e-05 PF00096.16.ls 5/14 402 424 .. 1 24 [] 29.4 1.1e-05 PF00096.16.fs 6/14 430 452 .. 1 24 [] 28.0 1e-05 PF00096.16.ls 6/14 430 452 .. 1 24 [] 30.0 8e-06 PF00096.16.ls 7/14 458 480 .. 1 24 [] 28.4 2.3e-05 PF00096.16.fs 7/14 458 480 .. 1 24 [] 26.5 2.4e-05 PF00096.16.ls 8/14 486 508 .. 1 24 [] 35.8 1.4e-07 PF00096.16.fs 8/14 486 508 .. 1 24 [] 33.8 3.5e-07 PF00096.16.fs 9/14 514 536 .. 1 24 [] 35.4 1.4e-07 PF00096.16.ls 9/14 514 536 .. 1 24 [] 37.3 4.7e-08 PF00096.16.ls 10/14 542 564 .. 1 24 [] 30.5 5.6e-06 PF00096.16.fs 10/14 542 564 .. 1 24 [] 28.5 7.5e-06 PF00096.16.ls 11/14 570 592 .. 1 24 [] 28.0 3e-05 PF00096.16.fs 11/14 570 592 .. 1 24 [] 26.1 3e-05 PF00096.16.ls 12/14 598 620 .. 1 24 [] 33.0 9.6e-07 PF00096.16.fs 12/14 598 620 .. 1 24 [] 31.0 1.7e-06 PF00096.16.fs 13/14 626 648 .. 1 24 [] 30.0 3.2e-06 PF00096.16.ls 13/14 626 648 .. 1 24 [] 32.0 2e-06 PF00096.16.fs 14/14 654 676 .. 1 24 [] 30.0 3.1e-06 PF00096.16.ls 14/14 654 676 .. 1 24 [] 32.0 2e-06 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 100 to 140: score 86.2, E = 9.3e-23 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+FeDV V Ft EEW++Ld aQr+LY++VMlE+++ LvSlg ff05119 100 VSFEDVVVTFTGEEWGHLDLAQRTLYQEVMLETCRLLVSLG 140 PF01352.17.fs: domain 1 of 1, from 100 to 140: score 84.2, E = 2.8e-23 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+FeDV V Ft EEW++Ld aQr+LY++VMlE+++ LvSlg ff05119 100 VSFEDVVVTFTGEEWGHLDLAQRTLYQEVMLETCRLLVSLG 140 PF00096.16.ls: domain 1 of 14, from 290 to 312: score 32.4, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fs k L rH+++H ff05119 290 YTCT-ECGKGFSKKWALVRHQQIH 312 PF00096.16.fs: domain 1 of 14, from 290 to 312: score 30.5, E = 2.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk Fs k L rH+++H ff05119 290 YTCT-ECGKGFSKKWALVRHQQIH 312 PF00096.16.ls: domain 2 of 14, from 318 to 340: score 28.7, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+++ ++ rH+r H ff05119 318 YECN-ECGKACRYMADVIRHMRLH 340 PF00096.16.fs: domain 2 of 14, from 318 to 340: score 26.8, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+++ ++ rH+r H ff05119 318 YECN-ECGKACRYMADVIRHMRLH 340 PF00096.16.ls: domain 3 of 14, from 346 to 368: score 29.5, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F+r+ +L+ H+r+H ff05119 346 YKCI-ECGKAFKRRFHLTEHQRIH 368 PF00096.16.fs: domain 3 of 14, from 346 to 368: score 27.5, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC +Cgk+F+r+ +L+ H+r+H ff05119 346 YKCI-ECGKAFKRRFHLTEHQRIH 368 PF00096.16.ls: domain 4 of 14, from 374 to 396: score 31.7, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s++ +H +tH ff05119 374 YECK-ECGKAFTHRSSFIQHNMTH 396 PF00096.16.fs: domain 4 of 14, from 374 to 396: score 29.8, E = 3.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s++ +H +tH ff05119 374 YECK-ECGKAFTHRSSFIQHNMTH 396 PF00096.16.fs: domain 5 of 14, from 402 to 424: score 27.5, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F +s++ +H+r+H ff05119 402 FLCK-ECGKAFYYSSSFAQHMRIH 424 PF00096.16.ls: domain 5 of 14, from 402 to 424: score 29.4, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F +s++ +H+r+H ff05119 402 FLCK-ECGKAFYYSSSFAQHMRIH 424 PF00096.16.fs: domain 6 of 14, from 430 to 452: score 28.0, E = 1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++s++ +H tH ff05119 430 YECG-ECGKAFTHRSTFIQHNVTH 452 PF00096.16.ls: domain 6 of 14, from 430 to 452: score 30.0, E = 8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++s++ +H tH ff05119 430 YECG-ECGKAFTHRSTFIQHNVTH 452 PF00096.16.ls: domain 7 of 14, from 458 to 480: score 28.4, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F+ +s++++H+r+H ff05119 458 FLCK-ECGKTFCLNSSFTQHMRIH 480 PF00096.16.fs: domain 7 of 14, from 458 to 480: score 26.5, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F+ +s++++H+r+H ff05119 458 FLCK-ECGKTFCLNSSFTQHMRIH 480 PF00096.16.ls: domain 8 of 14, from 486 to 508: score 35.8, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++s++ rH+rtH ff05119 486 YECG-ECGKAFTHRSTFIRHKRTH 508 PF00096.16.fs: domain 8 of 14, from 486 to 508: score 33.8, E = 3.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++s++ rH+rtH ff05119 486 YECG-ECGKAFTHRSTFIRHKRTH 508 PF00096.16.fs: domain 9 of 14, from 514 to 536: score 35.4, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L +H+r+H ff05119 514 FECK-ECGKAFCDSSSLIQHMRIH 536 PF00096.16.ls: domain 9 of 14, from 514 to 536: score 37.3, E = 4.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+++s+L +H+r+H ff05119 514 FECK-ECGKAFCDSSSLIQHMRIH 536 PF00096.16.ls: domain 10 of 14, from 542 to 564: score 30.5, E = 5.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s + rH rtH ff05119 542 YECS-ECGKAFTHHSVFIRHNRTH 564 PF00096.16.fs: domain 10 of 14, from 542 to 564: score 28.5, E = 7.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+++s + rH rtH ff05119 542 YECS-ECGKAFTHHSVFIRHNRTH 564 PF00096.16.ls: domain 11 of 14, from 570 to 592: score 28.0, E = 3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +C k+F +s+++rH+r+H ff05119 570 LECK-ECAKAFYYSSSFTRHMRIH 592 PF00096.16.fs: domain 11 of 14, from 570 to 592: score 26.1, E = 3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ +C k+F +s+++rH+r+H ff05119 570 LECK-ECAKAFYYSSSFTRHMRIH 592 PF00096.16.ls: domain 12 of 14, from 598 to 620: score 33.0, E = 9.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++++n+ rH r+H ff05119 598 YVCR-ECGKAFTQPANFVRHNRIH 620 PF00096.16.fs: domain 12 of 14, from 598 to 620: score 31.0, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F++++n+ rH r+H ff05119 598 YVCR-ECGKAFTQPANFVRHNRIH 620 PF00096.16.fs: domain 13 of 14, from 626 to 648: score 30.0, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F+++ L++H+rtH ff05119 626 FECK-ECEKAFCDNFALTQHMRTH 648 PF00096.16.ls: domain 13 of 14, from 626 to 648: score 32.0, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+F+++ L++H+rtH ff05119 626 FECK-ECEKAFCDNFALTQHMRTH 648 PF00096.16.fs: domain 14 of 14, from 654 to 676: score 30.0, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs++s++++H+++H ff05119 654 FECN-ECGKTFSHSSSFTHHRKIH 676 PF00096.16.ls: domain 14 of 14, from 654 to 676: score 32.0, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs++s++++H+++H ff05119 654 FECN-ECGKTFSHSSSFTHHRKIH 676 //