hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-07293022/chunk_1/iprscan-20090618-07293022.nocrc
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Query sequence: ff06095
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01485.11.fs IBR domain                                      85.7    2.8e-26   1
PF01485.11.ls IBR domain                                      87.6    3.7e-23   1
PF05773.12.fs RWD domain                                      27.2    4.9e-07   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           20.0    1.1e-06   3
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           18.7     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05773.12.fs   1/1       2    33 ..    85   118 .]    27.2  4.9e-07
PF00097.15.fs   1/3     119   164 ..     1    50 []    16.9  1.3e-05
PF00097.15.ls   1/1     119   164 ..     1    50 []    18.7   0.0017
PF01485.11.ls   1/1     188   249 ..     1    72 []    87.6  3.7e-23
PF01485.11.fs   1/1     188   249 ..     1    72 []    85.7  2.8e-26

Alignments of top-scoring domains:
PF05773.12.fs: domain 1 of 1, from 2 to 33: score 27.2, E = 4.9e-07
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   *->ilqLlskLeelaeenllpGevmifeliewlqenl<-*
                      +++L+++L+ l+ee+   G v++f+++++l+e+    
     ff06095     2    LSALCKHLDNLWEEHR--GSVVLFAWMQFLKEET    33   

PF00097.15.fs: domain 1 of 3, from 119 to 164: score 16.9, E = 1.3e-05
                   *->CrICleelkepsndfpl.ilpCgHsGslkyfCrsClerwlss...sg
                      C IC++e    +   ++ +l+C+H      +C++Cl+ +++++ ++g
     ff06095   119    CSICFCEKLGSE---CMyFLECRHV-----YCKACLKDYFEIqirDG 157  

                   nttCplC<-*
                   +++C  C   
     ff06095   158 QVQCLNC    164  

PF00097.15.ls: domain 1 of 1, from 119 to 164: score 18.7, E = 0.0017
                   *->CrICleelkepsndfpl.ilpCgHsGslkyfCrsClerwlss...sg
                      C IC++e    +   ++ +l+C+H      +C++Cl+ +++++ ++g
     ff06095   119    CSICFCEKLGSE---CMyFLECRHV-----YCKACLKDYFEIqirDG 157  

                   nttCplC<-*
                   +++C  C   
     ff06095   158 QVQCLNC    164  

PF01485.11.ls: domain 1 of 1, from 188 to 249: score 87.6, E = 3.7e-23
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      ++Y+rlll+s +  ++d+++CP+p+C+ +v++         ep++ +
     ff06095   188    ARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQ---------EPGCTM 225  

                   veCskGCgfeFCfnCkeewHgplsC<-*
                    +Cs+ C+f+FC++C+ ++Hg+++C   
     ff06095   226 GICSS-CNFAFCTLCRLTYHGVSPC    249  

PF01485.11.fs: domain 1 of 1, from 188 to 249: score 85.7, E = 2.8e-26
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      ++Y+rlll+s +  ++d+++CP+p+C+ +v++         ep++ +
     ff06095   188    ARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQ---------EPGCTM 225  

                   veCskGCgfeFCfnCkeewHgplsC<-*
                    +Cs+ C+f+FC++C+ ++Hg+++C   
     ff06095   226 GICSS-CNFAFCTLCRLTYHGVSPC    249  

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