hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03292280/chunk_1/iprscan-20080809-03292280.nocrc
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Query sequence: ff06424
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02460.9.fs Patched family                                  42.5    3.3e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02460.9.fs   1/2     169   212 ..   557   605 ..    19.6  8.3e-06
PF02460.9.fs   2/2     472   577 ..   827   937 ..    22.9    1e-06

Alignments of top-scoring domains:
PF02460.9.fs: domain 1 of 2, from 169 to 212: score 19.6, E = 8.3e-06
                   *->sRGAmGrffleiYcpFllnpkvrlcvllvfvvYlaiaiYGcvnikeg
                      s     +f ++ Y+pFll pk +++v+++f++ l+++ YG+++ + g
     ff06424   169    S-----SFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDG 210  

                   Ld<-*
                   Ld   
     ff06424   211 LD    212  

PF02460.9.fs: domain 2 of 2, from 472 to 577: score 22.9, E = 1e-06
                   *->licMavVcflFIpnpitvfvitlaiaSIdiGVfGfLSlWGVdLDPIs
                      l+c ++Vc++F+ np t+ +i+ ++a + + +fG + l G++L ++ 
     ff06424   472    LACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVP 518  

                   MitiIMSIGFSVDfsAHIaYhfyrsrgsesqstpdeRvadALealGWPvf
                   ++ +I S G  V+f+ H+a +f ++ g     +  +R++ ALe +  Pv+
     ff06424   519 VVILIASVGIGVEFTVHVALAFLTAIG-----DKNRRAVLALEHMFAPVL 563  

                   qaalSTiLcvlvLl<-*
                    +a ST+L+vl L+   
     ff06424   564 DGAVSTLLGVLMLA    577  

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