hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03353490/chunk_1/iprscan-20080809-03353490.nocrc
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Query sequence: ff06519
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                      127.1    3.2e-38   2
PF00169.19.ls PH domain                                      127.5    3.6e-35   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/2      71   172 ..     1    87 [.    48.4  2.8e-14
PF00169.19.ls   1/2      71   177 ..     1    92 []    46.8  6.9e-11
PF00169.19.fs   2/2     415   510 ..     1    92 []    78.7  1.7e-23
PF00169.19.ls   2/2     415   510 ..     1    92 []    80.7  4.3e-21

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 2, from 71 to 172: score 48.4, E = 2.8e-14
                   *->vikeGwLlkkg..........gkkswkkRyfvLfddvLlyykdkk..
                      +i+ GwLl+  ++++ +++ ++ ++w++R+f+L +  Ll y  +  +
     ff06519    71    PIYGGWLLLAPdgtdfdnpvhRSRKWQRRFFILYEHGLLRYALDEmp 117  

                   .kkpkgsipLsgi.qvtkvpdn.krkncFeirt.dretlllqaeseeerk
                   +  p+g+i++++++ v++ +  +++k++++i t+++ +++++ae++e   
     ff06519   118 tTLPQGTINMNQCtDVVDGEGRtGQKFSLCILTpEK-EHFIRAETKEIVS 166  

                   eWvkai<-*
                    W++++   
     ff06519   167 GWLEML    172  

PF00169.19.ls: domain 1 of 2, from 71 to 177: score 46.8, E = 6.9e-11
                   *->vikeGwLlkkg..........gkkswkkRyfvLfddvLlyykdkk..
                      +i+ GwLl+  ++++ +++ ++ ++w++R+f+L +  Ll y  +  +
     ff06519    71    PIYGGWLLLAPdgtdfdnpvhRSRKWQRRFFILYEHGLLRYALDEmp 117  

                   .kkpkgsipLsgi.qvtkvpdn.krkncFeirt.dretlllqaeseeerk
                   +  p+g+i++++++ v++ +  +++k++++i t+++ +++++ae++e   
     ff06519   118 tTLPQGTINMNQCtDVVDGEGRtGQKFSLCILTpEK-EHFIRAETKEIVS 166  

                   eWvkaiqsair<-*
                    W++++    r   
     ff06519   167 GWLEMLMVYPR    177  

PF00169.19.fs: domain 2 of 2, from 415 to 510: score 78.7, E = 1.7e-23
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk....kkpkgsip
                       +k+GwL+k+   ++wkk++fvL d +L yy+d+  ++ +++ g i+
     ff06519   415    NFKKGWLTKQYEDGQWKKHWFVLADQSLRYYRDSVaeeaADLDGEID 461  

                   Lsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsai
                   Ls +  vt++p + r+++F+i+t+++ +++l+a ++  r+ W++ i +++
     ff06519   462 LSACyDVTEYPVQ-RNYGFQIHTkEG-EFTLSAMTSGIRRNWIQTIMKHV 509  

                   r<-*
                   +   
     ff06519   510 H    510  

PF00169.19.ls: domain 2 of 2, from 415 to 510: score 80.7, E = 4.3e-21
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk....kkpkgsip
                       +k+GwL+k+   ++wkk++fvL d +L yy+d+  ++ +++ g i+
     ff06519   415    NFKKGWLTKQYEDGQWKKHWFVLADQSLRYYRDSVaeeaADLDGEID 461  

                   Lsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsai
                   Ls +  vt++p + r+++F+i+t+++ +++l+a ++  r+ W++ i +++
     ff06519   462 LSACyDVTEYPVQ-RNYGFQIHTkEG-EFTLSAMTSGIRRNWIQTIMKHV 509  

                   r<-*
                   +   
     ff06519   510 H    510  

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